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STH (saitohin)

Identity

Alias_symbol (synonym)MAPTIT
Other alias
HGNC (Hugo) STH
LocusID (NCBI) 246744
Atlas_Id 74307
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 45999250 and ends at 45999694 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STH   18839
Cards
Entrez_Gene (NCBI)STH  246744  saitohin
AliasesMAPTIT
GeneCards (Weizmann)STH
Ensembl hg19 (Hinxton)ENSG00000256762 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000256762 [Gene_View]  chr17:45999250-45999694 [Contig_View]  STH [Vega]
ICGC DataPortalENSG00000256762
TCGA cBioPortalSTH
AceView (NCBI)STH
Genatlas (Paris)STH
WikiGenes246744
SOURCE (Princeton)STH
Genetics Home Reference (NIH)STH
Genomic and cartography
GoldenPath hg38 (UCSC)STH  -     chr17:45999250-45999694 +  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STH  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblSTH - 17q21.31 [CytoView hg19]  STH - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBISTH [Mapview hg19]  STH [Mapview hg38]
OMIM607067   
Gene and transcription
Genbank (Entrez)AY179170 BC130319 BC130321
RefSeq transcript (Entrez)NM_001007532
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_007398 NT_167251 NT_187663
Consensus coding sequences : CCDS (NCBI)STH
Cluster EST : UnigeneHs.661831 [ NCBI ]
CGAP (NCI)Hs.661831
Alternative Splicing GalleryENSG00000256762
Gene ExpressionSTH [ NCBI-GEO ]   STH [ EBI - ARRAY_EXPRESS ]   STH [ SEEK ]   STH [ MEM ]
Gene Expression Viewer (FireBrowse)STH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)246744
GTEX Portal (Tissue expression)STH
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IWL8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IWL8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IWL8
Splice isoforms : SwissVarQ8IWL8
PhosPhoSitePlusQ8IWL8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)STH
DMDM Disease mutations246744
Blocks (Seattle)STH
SuperfamilyQ8IWL8
Human Protein AtlasENSG00000256762
Peptide AtlasQ8IWL8
HPRD06142
IPIIPI00383475   
Protein Interaction databases
DIP (DOE-UCLA)Q8IWL8
IntAct (EBI)Q8IWL8
FunCoupENSG00000256762
BioGRIDSTH
STRING (EMBL)STH
ZODIACSTH
Ontologies - Pathways
QuickGOQ8IWL8
Ontology : AmiGOnucleus  cytoplasm  
Ontology : EGO-EBInucleus  cytoplasm  
NDEx NetworkSTH
Atlas of Cancer Signalling NetworkSTH
Wikipedia pathwaysSTH
Orthology - Evolution
OrthoDB246744
GeneTree (enSembl)ENSG00000256762
Phylogenetic Trees/Animal Genes : TreeFamSTH
HOVERGENQ8IWL8
HOGENOMQ8IWL8
Homologs : HomoloGeneSTH
Homology/Alignments : Family Browser (UCSC)STH
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STH
dbVarSTH
ClinVarSTH
1000_GenomesSTH 
Exome Variant ServerSTH
ExAC (Exome Aggregation Consortium)STH (select the gene name)
Genetic variants : HAPMAP246744
Genomic Variants (DGV)STH [DGVbeta]
DECIPHERSTH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTH 
Mutations
ICGC Data PortalSTH 
TCGA Data PortalSTH 
Broad Tumor PortalSTH
OASIS PortalSTH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTH  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STH
DgiDB (Drug Gene Interaction Database)STH
DoCM (Curated mutations)STH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STH (select a term)
intoGenSTH
Cancer3DSTH(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607067   
Orphanet
MedgenSTH
Genetic Testing Registry STH
NextProtQ8IWL8 [Medical]
TSGene246744
GENETestsSTH
Target ValidationSTH
Huge Navigator STH [HugePedia]
snp3D : Map Gene to Disease246744
BioCentury BCIQSTH
ClinGenSTH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD246744
Chemical/Pharm GKB GenePA162405011
Clinical trialSTH
Miscellaneous
canSAR (ICR)STH (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTH
EVEXSTH
GoPubMedSTH
iHOPSTH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:44:22 CEST 2017

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