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STIP1 (stress induced phosphoprotein 1)

Identity

Alias_namesstress-induced-phosphoprotein 1
Alias_symbol (synonym)HOP
STI1
Other aliasHEL-S-94n
IEF-SSP-3521
P60
STI1L
HGNC (Hugo) STIP1
LocusID (NCBI) 10963
Atlas_Id 52069
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 63952744 and ends at 63972020 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AHNAK (11q12.3) / STIP1 (11q13.1)CEACAM7 (19q13.2) / STIP1 (11q13.1)EIF4G2 (11p15.3) / STIP1 (11q13.1)
LOC100507412 (-) / STIP1 (11q13.1)SLC25A29 (14q32.2) / STIP1 (11q13.1)STIP1 (11q13.1) / WDR74 (11q12.3)
AHNAK 11q12.3 / STIP1 11q13.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STIP1   11387
Cards
Entrez_Gene (NCBI)STIP1  10963  stress induced phosphoprotein 1
AliasesHEL-S-94n; HOP; IEF-SSP-3521; P60; 
STI1; STI1L
GeneCards (Weizmann)STIP1
Ensembl hg19 (Hinxton)ENSG00000168439 [Gene_View]  chr11:63952744-63972020 [Contig_View]  STIP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000168439 [Gene_View]  chr11:63952744-63972020 [Contig_View]  STIP1 [Vega]
ICGC DataPortalENSG00000168439
TCGA cBioPortalSTIP1
AceView (NCBI)STIP1
Genatlas (Paris)STIP1
WikiGenes10963
SOURCE (Princeton)STIP1
Genetics Home Reference (NIH)STIP1
Genomic and cartography
GoldenPath hg19 (UCSC)STIP1  -     chr11:63952744-63972020 +  11q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)STIP1  -     11q13.1   [Description]    (hg38-Dec_2013)
EnsemblSTIP1 - 11q13.1 [CytoView hg19]  STIP1 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBISTIP1 [Mapview hg19]  STIP1 [Mapview hg38]
OMIM605063   
Gene and transcription
Genbank (Entrez)AK225736 AK291555 AK297319 BC002987 BC039299
RefSeq transcript (Entrez)NM_001282652 NM_001282653 NM_006819
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)STIP1
Cluster EST : UnigeneHs.337295 [ NCBI ]
CGAP (NCI)Hs.337295
Alternative Splicing GalleryENSG00000168439
Gene ExpressionSTIP1 [ NCBI-GEO ]   STIP1 [ EBI - ARRAY_EXPRESS ]   STIP1 [ SEEK ]   STIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)STIP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10963
GTEX Portal (Tissue expression)STIP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP31948   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP31948  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP31948
Splice isoforms : SwissVarP31948
PhosPhoSitePlusP31948
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)STI1_HS-bd    TPR-contain_dom    TPR-like_helical_dom    TPR_1    TPR_2    TPR_repeat   
Domain families : Pfam (Sanger)TPR_1 (PF00515)    TPR_11 (PF13414)    TPR_2 (PF07719)   
Domain families : Pfam (NCBI)pfam00515    pfam13414    pfam07719   
Domain families : Smart (EMBL)STI1 (SM00727)  TPR (SM00028)  
Conserved Domain (NCBI)STIP1
DMDM Disease mutations10963
Blocks (Seattle)STIP1
PDB (SRS)1ELR    1ELW    2LNI    3ESK    3FWV   
PDB (PDBSum)1ELR    1ELW    2LNI    3ESK    3FWV   
PDB (IMB)1ELR    1ELW    2LNI    3ESK    3FWV   
PDB (RSDB)1ELR    1ELW    2LNI    3ESK    3FWV   
Structural Biology KnowledgeBase1ELR    1ELW    2LNI    3ESK    3FWV   
SCOP (Structural Classification of Proteins)1ELR    1ELW    2LNI    3ESK    3FWV   
CATH (Classification of proteins structures)1ELR    1ELW    2LNI    3ESK    3FWV   
SuperfamilyP31948
Human Protein AtlasENSG00000168439
Peptide AtlasP31948
HPRD05454
IPIIPI00013894   IPI01010503   IPI00908463   IPI00479946   IPI01014301   IPI01013938   
Protein Interaction databases
DIP (DOE-UCLA)P31948
IntAct (EBI)P31948
FunCoupENSG00000168439
BioGRIDSTIP1
STRING (EMBL)STIP1
ZODIACSTIP1
Ontologies - Pathways
QuickGOP31948
Ontology : AmiGOprotein binding  nucleus  Golgi apparatus  response to stress  protein C-terminus binding  Hsp70 protein binding  myelin sheath  protein complex  poly(A) RNA binding  chaperone binding  
Ontology : EGO-EBIprotein binding  nucleus  Golgi apparatus  response to stress  protein C-terminus binding  Hsp70 protein binding  myelin sheath  protein complex  poly(A) RNA binding  chaperone binding  
Pathways : KEGGPrion diseases   
NDEx NetworkSTIP1
Atlas of Cancer Signalling NetworkSTIP1
Wikipedia pathwaysSTIP1
Orthology - Evolution
OrthoDB10963
GeneTree (enSembl)ENSG00000168439
Phylogenetic Trees/Animal Genes : TreeFamSTIP1
HOVERGENP31948
HOGENOMP31948
Homologs : HomoloGeneSTIP1
Homology/Alignments : Family Browser (UCSC)STIP1
Gene fusions - Rearrangements
Fusion : MitelmanAHNAK/STIP1 [11q12.3/11q13.1]  [t(11;11)(q12;q13)]  
Fusion: TCGAAHNAK 11q12.3 STIP1 11q13.1 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STIP1
dbVarSTIP1
ClinVarSTIP1
1000_GenomesSTIP1 
Exome Variant ServerSTIP1
ExAC (Exome Aggregation Consortium)STIP1 (select the gene name)
Genetic variants : HAPMAP10963
Genomic Variants (DGV)STIP1 [DGVbeta]
DECIPHER (Syndromes)11:63952744-63972020  ENSG00000168439
CONAN: Copy Number AnalysisSTIP1 
Mutations
ICGC Data PortalSTIP1 
TCGA Data PortalSTIP1 
Broad Tumor PortalSTIP1
OASIS PortalSTIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTIP1
intOGen PortalSTIP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STIP1
DgiDB (Drug Gene Interaction Database)STIP1
DoCM (Curated mutations)STIP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STIP1 (select a term)
intoGenSTIP1
Cancer3DSTIP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605063   
Orphanet
MedgenSTIP1
Genetic Testing Registry STIP1
NextProtP31948 [Medical]
TSGene10963
GENETestsSTIP1
Huge Navigator STIP1 [HugePedia]
snp3D : Map Gene to Disease10963
BioCentury BCIQSTIP1
ClinGenSTIP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10963
Chemical/Pharm GKB GenePA36196
Clinical trialSTIP1
Miscellaneous
canSAR (ICR)STIP1 (select the gene name)
Probes
Litterature
PubMed106 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTIP1
EVEXSTIP1
GoPubMedSTIP1
iHOPSTIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:21:14 CEST 2017

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