Atlas of Genetics and Cytogenetics in Oncology and Haematology


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STK19 (serine/threonine kinase 19)

Identity

Alias_symbol (synonym)D6S60
G11
RP1
Other aliasD6S60E
HLA-RP1
HGNC (Hugo) STK19
LocusID (NCBI) 8859
Atlas_Id 43508
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31971869 and ends at 31981446 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RAB8B (15q22.2) / STK19 (6p21.33)STK19 (6p21.33) / STK19 (6p21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STK19   11398
Cards
Entrez_Gene (NCBI)STK19  8859  serine/threonine kinase 19
AliasesD6S60; D6S60E; G11; HLA-RP1; 
RP1
GeneCards (Weizmann)STK19
Ensembl hg19 (Hinxton)ENSG00000204344 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204344 [Gene_View]  ENSG00000204344 [Sequence]  chr6:31971869-31981446 [Contig_View]  STK19 [Vega]
ICGC DataPortalENSG00000204344
TCGA cBioPortalSTK19
AceView (NCBI)STK19
Genatlas (Paris)STK19
WikiGenes8859
SOURCE (Princeton)STK19
Genetics Home Reference (NIH)STK19
Genomic and cartography
GoldenPath hg38 (UCSC)STK19  -     chr6:31971869-31981446 +  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STK19  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblSTK19 - 6p21.33 [CytoView hg19]  STK19 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBISTK19 [Mapview hg19]  STK19 [Mapview hg38]
OMIM604977   
Gene and transcription
Genbank (Entrez)AK302111 AK303438 AK307198 BC016916 BC110347
RefSeq transcript (Entrez)NM_004197 NM_032454
RefSeq genomic (Entrez)NC_000006 NT_113891 NT_167245 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)STK19
Cluster EST : UnigeneHs.654371 [ NCBI ]
CGAP (NCI)Hs.654371
Alternative Splicing GalleryENSG00000204344
Gene ExpressionSTK19 [ NCBI-GEO ]   STK19 [ EBI - ARRAY_EXPRESS ]   STK19 [ SEEK ]   STK19 [ MEM ]
Gene Expression Viewer (FireBrowse)STK19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8859
GTEX Portal (Tissue expression)STK19
Human Protein AtlasENSG00000204344-STK19 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP49842   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP49842  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP49842
Splice isoforms : SwissVarP49842
Catalytic activity : Enzyme2.7.11.1 [ Enzyme-Expasy ]   2.7.11.12.7.11.1 [ IntEnz-EBI ]   2.7.11.1 [ BRENDA ]   2.7.11.1 [ KEGG ]   
PhosPhoSitePlusP49842
Domains : Interpro (EBI)Ser/Thr_kinase_19   
Domain families : Pfam (Sanger)Stk19 (PF10494)   
Domain families : Pfam (NCBI)pfam10494   
Conserved Domain (NCBI)STK19
DMDM Disease mutations8859
Blocks (Seattle)STK19
SuperfamilyP49842
Human Protein Atlas [tissue]ENSG00000204344-STK19 [tissue]
Peptide AtlasP49842
HPRD07281
IPIIPI00028571   IPI00216280   IPI00216282   IPI00513755   IPI00872014   IPI00908901   IPI00923535   IPI01026502   IPI00647339   IPI01021856   IPI00946847   IPI00945269   
Protein Interaction databases
DIP (DOE-UCLA)P49842
IntAct (EBI)P49842
FunCoupENSG00000204344
BioGRIDSTK19
STRING (EMBL)STK19
ZODIACSTK19
Ontologies - Pathways
QuickGOP49842
Ontology : AmiGOprotein serine/threonine kinase activity  ATP binding  nucleus  protein phosphorylation  nuclear speck  
Ontology : EGO-EBIprotein serine/threonine kinase activity  ATP binding  nucleus  protein phosphorylation  nuclear speck  
NDEx NetworkSTK19
Atlas of Cancer Signalling NetworkSTK19
Wikipedia pathwaysSTK19
Orthology - Evolution
OrthoDB8859
GeneTree (enSembl)ENSG00000204344
Phylogenetic Trees/Animal Genes : TreeFamSTK19
HOVERGENP49842
HOGENOMP49842
Homologs : HomoloGeneSTK19
Homology/Alignments : Family Browser (UCSC)STK19
Gene fusions - Rearrangements
Fusion : QuiverSTK19
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTK19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STK19
dbVarSTK19
ClinVarSTK19
1000_GenomesSTK19 
Exome Variant ServerSTK19
ExAC (Exome Aggregation Consortium)ENSG00000204344
GNOMAD BrowserENSG00000204344
Varsome BrowserSTK19
Genetic variants : HAPMAP8859
Genomic Variants (DGV)STK19 [DGVbeta]
DECIPHERSTK19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTK19 
Mutations
ICGC Data PortalSTK19 
TCGA Data PortalSTK19 
Broad Tumor PortalSTK19
OASIS PortalSTK19 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSTK19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STK19
DgiDB (Drug Gene Interaction Database)STK19
DoCM (Curated mutations)STK19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STK19 (select a term)
intoGenSTK19
Cancer3DSTK19(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604977   
Orphanet
DisGeNETSTK19
MedgenSTK19
Genetic Testing Registry STK19
NextProtP49842 [Medical]
TSGene8859
GENETestsSTK19
Target ValidationSTK19
Huge Navigator STK19 [HugePedia]
snp3D : Map Gene to Disease8859
BioCentury BCIQSTK19
ClinGenSTK19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8859
Chemical/Pharm GKB GenePA36206
Clinical trialSTK19
Miscellaneous
canSAR (ICR)STK19 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTK19
EVEXSTK19
GoPubMedSTK19
iHOPSTK19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:55:29 CEST 2018

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