Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

STK32A (serine/threonine kinase 32A)

Identity

Alias_symbol (synonym)MGC22688
YANK1
HGNC (Hugo) STK32A
LocusID (NCBI) 202374
Atlas_Id 74309
Location 5q32  [Link to chromosome band 5q32]
Location_base_pair Starts at 146614579 and ends at 146763768 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CPEB4 (5q35.2) / STK32A (5q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STK32A   28317
Cards
Entrez_Gene (NCBI)STK32A  202374  serine/threonine kinase 32A
AliasesYANK1
GeneCards (Weizmann)STK32A
Ensembl hg19 (Hinxton)ENSG00000169302 [Gene_View]  chr5:146614579-146763768 [Contig_View]  STK32A [Vega]
Ensembl hg38 (Hinxton)ENSG00000169302 [Gene_View]  chr5:146614579-146763768 [Contig_View]  STK32A [Vega]
ICGC DataPortalENSG00000169302
TCGA cBioPortalSTK32A
AceView (NCBI)STK32A
Genatlas (Paris)STK32A
WikiGenes202374
SOURCE (Princeton)STK32A
Genetics Home Reference (NIH)STK32A
Genomic and cartography
GoldenPath hg19 (UCSC)STK32A  -     chr5:146614579-146763768 +  5q32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)STK32A  -     5q32   [Description]    (hg38-Dec_2013)
EnsemblSTK32A - 5q32 [CytoView hg19]  STK32A - 5q32 [CytoView hg38]
Mapping of homologs : NCBISTK32A [Mapview hg19]  STK32A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094580 AK299099 AK315942 BC021666 DA110948
RefSeq transcript (Entrez)NM_001112724 NM_001287740 NM_145001
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)STK32A
Cluster EST : UnigeneHs.585069 [ NCBI ]
CGAP (NCI)Hs.585069
Alternative Splicing GalleryENSG00000169302
Gene ExpressionSTK32A [ NCBI-GEO ]   STK32A [ EBI - ARRAY_EXPRESS ]   STK32A [ SEEK ]   STK32A [ MEM ]
Gene Expression Viewer (FireBrowse)STK32A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)202374
GTEX Portal (Tissue expression)STK32A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WU08   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WU08  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WU08
Splice isoforms : SwissVarQ8WU08
Catalytic activity : Enzyme2.7.11.1 [ Enzyme-Expasy ]   2.7.11.12.7.11.1 [ IntEnz-EBI ]   2.7.11.1 [ BRENDA ]   2.7.11.1 [ KEGG ]   
PhosPhoSitePlusQ8WU08
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (EBI)Kinase-like_dom    Prot_kinase_dom    Protein_kinase_ATP_BS    Ser/Thr_dual-sp_kinase    Ser/Thr_kinase_AS   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Domain families : Smart (EMBL)S_TKc (SM00220)  
Conserved Domain (NCBI)STK32A
DMDM Disease mutations202374
Blocks (Seattle)STK32A
PDB (SRS)4FR4   
PDB (PDBSum)4FR4   
PDB (IMB)4FR4   
PDB (RSDB)4FR4   
Structural Biology KnowledgeBase4FR4   
SCOP (Structural Classification of Proteins)4FR4   
CATH (Classification of proteins structures)4FR4   
SuperfamilyQ8WU08
Human Protein AtlasENSG00000169302
Peptide AtlasQ8WU08
HPRD15445
IPIIPI00936073   IPI00102805   IPI01011896   IPI00746239   
Protein Interaction databases
DIP (DOE-UCLA)Q8WU08
IntAct (EBI)Q8WU08
FunCoupENSG00000169302
BioGRIDSTK32A
STRING (EMBL)STK32A
ZODIACSTK32A
Ontologies - Pathways
QuickGOQ8WU08
Ontology : AmiGOprotein serine/threonine kinase activity  ATP binding  plasma membrane  protein phosphorylation  metal ion binding  activation of mitophagy in response to mitochondrial depolarization  
Ontology : EGO-EBIprotein serine/threonine kinase activity  ATP binding  plasma membrane  protein phosphorylation  metal ion binding  activation of mitophagy in response to mitochondrial depolarization  
NDEx NetworkSTK32A
Atlas of Cancer Signalling NetworkSTK32A
Wikipedia pathwaysSTK32A
Orthology - Evolution
OrthoDB202374
GeneTree (enSembl)ENSG00000169302
Phylogenetic Trees/Animal Genes : TreeFamSTK32A
HOVERGENQ8WU08
HOGENOMQ8WU08
Homologs : HomoloGeneSTK32A
Homology/Alignments : Family Browser (UCSC)STK32A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTK32A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STK32A
dbVarSTK32A
ClinVarSTK32A
1000_GenomesSTK32A 
Exome Variant ServerSTK32A
ExAC (Exome Aggregation Consortium)STK32A (select the gene name)
Genetic variants : HAPMAP202374
Genomic Variants (DGV)STK32A [DGVbeta]
DECIPHER (Syndromes)5:146614579-146763768  ENSG00000169302
CONAN: Copy Number AnalysisSTK32A 
Mutations
ICGC Data PortalSTK32A 
TCGA Data PortalSTK32A 
Broad Tumor PortalSTK32A
OASIS PortalSTK32A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTK32A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTK32A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STK32A
DgiDB (Drug Gene Interaction Database)STK32A
DoCM (Curated mutations)STK32A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STK32A (select a term)
intoGenSTK32A
Cancer3DSTK32A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSTK32A
Genetic Testing Registry STK32A
NextProtQ8WU08 [Medical]
TSGene202374
GENETestsSTK32A
Huge Navigator STK32A [HugePedia]
snp3D : Map Gene to Disease202374
BioCentury BCIQSTK32A
ClinGenSTK32A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD202374
Chemical/Pharm GKB GenePA134932545
Clinical trialSTK32A
Miscellaneous
canSAR (ICR)STK32A (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTK32A
EVEXSTK32A
GoPubMedSTK32A
iHOPSTK32A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Dec 29 13:51:59 CET 2016

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.