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STKLD1 (serine/threonine kinase-like domain containing 1)

Identity

Alias_namesC9orf96
chromosome 9 open reading frame 96
Alias_symbol (synonym)MGC43306
SGK071
Other aliasSgK071
Sk521
HGNC (Hugo) STKLD1
LocusID (NCBI) 169436
Atlas_Id 74313
Location 9q34.2  [Link to chromosome band 9q34]
Location_base_pair Starts at 136243284 and ends at 136271220 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SIDT2 (11q23.3) / STKLD1 (9q34.2)STKLD1 (9q34.2) / SIDT2 (11q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STKLD1   28669
Cards
Entrez_Gene (NCBI)STKLD1  169436  serine/threonine kinase-like domain containing 1
AliasesC9orf96; SgK071; Sk521
GeneCards (Weizmann)STKLD1
Ensembl hg19 (Hinxton)ENSG00000198870 [Gene_View]  chr9:136243284-136271220 [Contig_View]  STKLD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198870 [Gene_View]  chr9:136243284-136271220 [Contig_View]  STKLD1 [Vega]
ICGC DataPortalENSG00000198870
TCGA cBioPortalSTKLD1
AceView (NCBI)STKLD1
Genatlas (Paris)STKLD1
WikiGenes169436
SOURCE (Princeton)STKLD1
Genetics Home Reference (NIH)STKLD1
Genomic and cartography
GoldenPath hg19 (UCSC)STKLD1  -     chr9:136243284-136271220 +  9q34.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)STKLD1  -     9q34.2   [Description]    (hg38-Dec_2013)
EnsemblSTKLD1 - 9q34.2 [CytoView hg19]  STKLD1 - 9q34.2 [CytoView hg38]
Mapping of homologs : NCBISTKLD1 [Mapview hg19]  STKLD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131533 AK131545 AK294947 BC036504
RefSeq transcript (Entrez)NM_153710
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929367 NW_009646201
Consensus coding sequences : CCDS (NCBI)STKLD1
Cluster EST : UnigeneHs.720195 [ NCBI ]
CGAP (NCI)Hs.720195
Alternative Splicing GalleryENSG00000198870
Gene ExpressionSTKLD1 [ NCBI-GEO ]   STKLD1 [ EBI - ARRAY_EXPRESS ]   STKLD1 [ SEEK ]   STKLD1 [ MEM ]
Gene Expression Viewer (FireBrowse)STKLD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)169436
GTEX Portal (Tissue expression)STKLD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NE28   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NE28  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NE28
Splice isoforms : SwissVarQ8NE28
PhosPhoSitePlusQ8NE28
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_DOM (PS50011)   
Domains : Interpro (EBI)ARM-type_fold    Kinase-like_dom    Prot_kinase_dom   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Conserved Domain (NCBI)STKLD1
DMDM Disease mutations169436
Blocks (Seattle)STKLD1
SuperfamilyQ8NE28
Human Protein AtlasENSG00000198870
Peptide AtlasQ8NE28
HPRD12990
IPIIPI00470568   IPI00442015   IPI00807445   IPI00908692   
Protein Interaction databases
DIP (DOE-UCLA)Q8NE28
IntAct (EBI)Q8NE28
FunCoupENSG00000198870
BioGRIDSTKLD1
STRING (EMBL)STKLD1
ZODIACSTKLD1
Ontologies - Pathways
QuickGOQ8NE28
Ontology : AmiGOprotein kinase activity  ATP binding  protein phosphorylation  
Ontology : EGO-EBIprotein kinase activity  ATP binding  protein phosphorylation  
NDEx NetworkSTKLD1
Atlas of Cancer Signalling NetworkSTKLD1
Wikipedia pathwaysSTKLD1
Orthology - Evolution
OrthoDB169436
GeneTree (enSembl)ENSG00000198870
Phylogenetic Trees/Animal Genes : TreeFamSTKLD1
HOVERGENQ8NE28
HOGENOMQ8NE28
Homologs : HomoloGeneSTKLD1
Homology/Alignments : Family Browser (UCSC)STKLD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTKLD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STKLD1
dbVarSTKLD1
ClinVarSTKLD1
1000_GenomesSTKLD1 
Exome Variant ServerSTKLD1
ExAC (Exome Aggregation Consortium)STKLD1 (select the gene name)
Genetic variants : HAPMAP169436
Genomic Variants (DGV)STKLD1 [DGVbeta]
DECIPHER (Syndromes)9:136243284-136271220  ENSG00000198870
CONAN: Copy Number AnalysisSTKLD1 
Mutations
ICGC Data PortalSTKLD1 
TCGA Data PortalSTKLD1 
Broad Tumor PortalSTKLD1
OASIS PortalSTKLD1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSTKLD1
BioMutasearch STKLD1
DgiDB (Drug Gene Interaction Database)STKLD1
DoCM (Curated mutations)STKLD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STKLD1 (select a term)
intoGenSTKLD1
Cancer3DSTKLD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSTKLD1
Genetic Testing Registry STKLD1
NextProtQ8NE28 [Medical]
TSGene169436
GENETestsSTKLD1
Huge Navigator STKLD1 [HugePedia]
snp3D : Map Gene to Disease169436
BioCentury BCIQSTKLD1
ClinGenSTKLD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD169436
Chemical/Pharm GKB GenePA134891744
Clinical trialSTKLD1
Miscellaneous
canSAR (ICR)STKLD1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTKLD1
EVEXSTKLD1
GoPubMedSTKLD1
iHOPSTKLD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:56 CET 2017

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