Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

STMN1 (stathmin 1)

Identity

Other namesC1orf215
LAP18
Lag
OP18
PP17
PP19
PR22
SMN
HGNC (Hugo) STMN1
LocusID (NCBI) 3925
Location 1p36.11
Location_base_pair Starts at 26210677 and ends at 26232993 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)STMN1   6510
Cards
Entrez_Gene (NCBI)STMN1  3925  stathmin 1
GeneCards (Weizmann)STMN1
Ensembl (Hinxton)ENSG00000117632 [Gene_View]  chr1:26210677-26232993 [Contig_View]  STMN1 [Vega]
ICGC DataPortalENSG00000117632
cBioPortalSTMN1
AceView (NCBI)STMN1
Genatlas (Paris)STMN1
WikiGenes3925
SOURCE (Princeton)NM_001145454 NM_005563 NM_152497 NM_203399 NM_203401
Genomic and cartography
GoldenPath (UCSC)STMN1  -  1p36.11   chr1:26210677-26232993 -  1p36.11   [Description]    (hg19-Feb_2009)
EnsemblSTMN1 - 1p36.11 [CytoView]
Mapping of homologs : NCBISTMN1 [Mapview]
OMIM151442   
Gene and transcription
Genbank (Entrez)AB209282 AB451319 AB451448 AK054594 AK056768
RefSeq transcript (Entrez)NM_001145454 NM_005563 NM_152497 NM_203399 NM_203401
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_032977 NW_001838576 NW_004929289
Consensus coding sequences : CCDS (NCBI)STMN1
Cluster EST : UnigeneHs.209983 [ NCBI ]
CGAP (NCI)Hs.209983
Alternative Splicing : Fast-db (Paris)GSHG0001879
Alternative Splicing GalleryENSG00000117632
Gene ExpressionSTMN1 [ NCBI-GEO ]     STMN1 [ SEEK ]   STMN1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP16949 (Uniprot)
NextProtP16949  [Medical]
With graphics : InterProP16949
Splice isoforms : SwissVarP16949 (Swissvar)
Domaine pattern : Prosite (Expaxy)STATHMIN_1 (PS00563)    STATHMIN_2 (PS01041)    STATHMIN_3 (PS51663)   
Domains : Interpro (EBI)Stathmin_fam [organisation]  
Related proteins : CluSTrP16949
Domain families : Pfam (Sanger)Stathmin (PF00836)   
Domain families : Pfam (NCBI)pfam00836   
DMDM Disease mutations3925
Blocks (Seattle)P16949
Human Protein AtlasENSG00000117632 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP16949
HPRD01047
IPIIPI00479997   IPI00921996   IPI00643115   IPI00744618   IPI00065537   IPI00642012   
Protein Interaction databases
DIP (DOE-UCLA)P16949
IntAct (EBI)P16949
FunCoupENSG00000117632
BioGRIDSTMN1
InParanoidP16949
Interologous Interaction database P16949
IntegromeDBSTMN1
STRING (EMBL)STMN1
Ontologies - Pathways
Ontology : AmiGOsignal transducer activity  intracellular  cytosol  microtubule  microtubule depolymerization  mitotic spindle organization  signal transduction  axonogenesis  response to virus  tubulin binding  membrane  negative regulation of microtubule polymerization  intracellular signal transduction  positive regulation of cellular component movement  extracellular vesicular exosome  
Ontology : EGO-EBIsignal transducer activity  intracellular  cytosol  microtubule  microtubule depolymerization  mitotic spindle organization  signal transduction  axonogenesis  response to virus  tubulin binding  membrane  negative regulation of microtubule polymerization  intracellular signal transduction  positive regulation of cellular component movement  extracellular vesicular exosome  
Pathways : BIOCARTAStathmin and breast cancer resistance to antimicrotubule agents [Genes]   
Pathways : KEGGMAPK signaling pathway    MicroRNAs in cancer   
Protein Interaction DatabaseSTMN1
Wikipedia pathwaysSTMN1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)STMN1
snp3D : Map Gene to Disease3925
SNP (GeneSNP Utah)STMN1
SNP : HGBaseSTMN1
Genetic variants : HAPMAPSTMN1
Exome VariantSTMN1
1000_GenomesSTMN1 
ICGC programENSG00000117632 
Somatic Mutations in Cancer : COSMICSTMN1 
CONAN: Copy Number AnalysisSTMN1 
Mutations and Diseases : HGMDSTMN1
Mutations and Diseases : intOGenSTMN1
Genomic VariantsSTMN1  STMN1 [DGVbeta]
dbVarSTMN1
ClinVarSTMN1
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM151442   
MedgenSTMN1
GENETestsSTMN1
Disease Genetic AssociationSTMN1
Huge Navigator STMN1 [HugePedia]  STMN1 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneSTMN1
Homology/Alignments : Family Browser (UCSC)STMN1
Phylogenetic Trees/Animal Genes : TreeFamSTMN1
Chemical/Protein Interactions : CTD3925
Chemical/Pharm GKB GenePA35491
Clinical trialSTMN1
Cancer Resource (Charite)ENSG00000117632
Other databases
Probes
Litterature
PubMed160 Pubmed reference(s) in Entrez
CoreMineSTMN1
iHOPSTMN1
OncoSearchSTMN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 19:20:56 CEST 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.