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STMN1 (stathmin 1)

Identity

Other namesC1orf215
LAP18
Lag
OP18
PP17
PP19
PR22
SMN
HGNC (Hugo) STMN1
LocusID (NCBI) 3925
Location 1p36.11
Location_base_pair Starts at 26210677 and ends at 26232993 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)STMN1   6510
Entrez_Gene (NCBI)STMN1  3925  stathmin 1
Cards
GeneCards (Weizmann)STMN1
Ensembl (Hinxton)ENSG00000117632 [Gene_View]  chr1:26210677-26232993 [Contig_View]  STMN1 [Vega]
AceView (NCBI)STMN1
Genatlas (Paris)STMN1
SOURCE (Stanford)NM_001145454 NM_005563 NM_152497 NM_203399 NM_203401
Genomic and cartography
GoldenPath (UCSC)STMN1  -  1p36.11   chr1:26210677-26232993 -  1p36.11   [Description]    (hg19-Feb_2009)
EnsemblSTMN1 - 1p36.11 [CytoView]
Mapping of homologs : NCBISTMN1 [Mapview]
OMIM151442   
Gene and transcription
Genbank (Entrez)AB209282 AB451319 AB451448 AK054594 AK056768
RefSeq transcript (SRS)NM_001145454 NM_005563 NM_152497 NM_203399 NM_203401
RefSeq transcript (Entrez)NM_001145454 NM_005563 NM_152497 NM_203399 NM_203401
RefSeq genomic (SRS)AC_000133 NC_000001 NC_018912 NT_004610 NW_001838576 NW_004077990
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_004610 NW_001838576 NW_004077990
Consensus coding sequences : CCDS (NCBI)STMN1
Cluster EST : UnigeneHs.209983 [ SRS ] Hs.209983 [ NCBI ]
CGAP (NCI)Hs.209983
Alternative Splicing : Fast-db (Paris)GSHG0001879
Alternative Splicing GalleryENSG00000117632
Gene ExpressionSTMN1 [ NCBI-GEO ]   STMN1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP16949 (SRS) P16949 (Uniprot)
NextProtP16949
With graphics : InterProP16949
Splice isoforms : SwissVarP16949(Swissvar)
Domaine pattern : Prosite (SRS)STATHMIN_1 (PS00563)    STATHMIN_2 (PS01041)    STATHMIN_3 (PS51663)   
Domaine pattern : Prosite (Expaxy)STATHMIN_1 (PS00563)    STATHMIN_2 (PS01041)    STATHMIN_3 (PS51663)   
Domains : Interpro (SRS)Stathmin_fam   
Domains : Interpro (EBI)Stathmin_fam   
Related proteins : CluSTrP16949
Domain families : Pfam (SRS)Stathmin (PF00836)   
Domain families : Pfam (Sanger)Stathmin (PF00836)   
Domain families : Pfam (NCBI)pfam00836   
DMDM3925
Blocks (Seattle)P16949
Human Protein AtlasENSG00000117632
HPRD01047
IPIIPI00479997   IPI00921996   IPI00643115   IPI00744618   IPI00065537   IPI00642012   
Protein Interaction databases
DIP (DOE-UCLA)P16949
IntAct (EBI)P16949
FunCoupENSG00000117632
REACTOMESTMN1
Protein Interaction Database3925
BioGRIDSTMN1
InParanoidP16949
Interologous Interaction database P16949
IntegromeDBSTMN1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)STMN1
SNP (GeneSNP Utah)STMN1
SNP : HGBaseSTMN1
Genetic variants : HAPMAPSTMN1
Somatic Mutations in Cancer : COSMICSTMN1 
CONAN: Copy Number AnalysisSTMN1 
Mutations and Diseases : HGMDSTMN1
OMIM151442   
GENETests151442   
Disease Genetic AssociationSTMN1
Huge Navigator STMN1 [HugePedia]  STMN1 [HugeCancerGEM]
Genomic VariantsSTMN1  STMN1 [DGVbeta]
ClinVarSTMN1
snp3D : Map Gene to Disease3925
General knowledge
Homologs : HomoloGeneSTMN1
Homology/Alignments : Family Browser (UCSC)STMN1
Phylogenetic Trees/Animal Genes : TreeFamSTMN1
Chemical/Protein Interactions : CTD3925
Chemical/Pharm GKB GenePA35491
Clinical trialSTMN1
Cancer Resource (Charite)ENSG00000117632
Ontology : AmiGOsignal transducer activity  intracellular  cytosol  microtubule  microtubule depolymerization  mitotic spindle organization  signal transduction  axonogenesis  response to virus  tubulin binding  membrane  negative regulation of microtubule polymerization  intracellular signal transduction  positive regulation of cellular component movement  
Ontology : EGO-EBIsignal transducer activity  intracellular  cytosol  microtubule  microtubule depolymerization  mitotic spindle organization  signal transduction  axonogenesis  response to virus  tubulin binding  membrane  negative regulation of microtubule polymerization  intracellular signal transduction  positive regulation of cellular component movement  
Pathways : BIOCARTAStathmin and breast cancer resistance to antimicrotubule agents [Genes]   
Pathways : KEGGMAPK signaling pathway
Other databases
Probes
Litterature
PubMed135 Pubmed reference(s) in Entrez
PubGeneSTMN1
iHOPSTMN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:37:43 CEST 2013
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