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STMN2 (stathmin 2)

Identity

Alias_namesSCGN10
stathmin-like 2
Alias_symbol (synonym)SCG10
Other alias
HGNC (Hugo) STMN2
LocusID (NCBI) 11075
Atlas_Id 54882
Location 8q21.13  [Link to chromosome band 8q21]
Location_base_pair Starts at 79610814 and ends at 79666175 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
STMN2 (8q21.13) / FAT1 (4q35.2)TMEM67 (8q22.1) / STMN2 (8q21.13)TOMM70 (3q12.2) / STMN2 (8q21.13)
TMEM67 8q22.1 / STMN2 8q21.13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STMN2   10577
Cards
Entrez_Gene (NCBI)STMN2  11075  stathmin 2
AliasesSCG10; SCGN10
GeneCards (Weizmann)STMN2
Ensembl hg19 (Hinxton)ENSG00000104435 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104435 [Gene_View]  chr8:79610814-79666175 [Contig_View]  STMN2 [Vega]
ICGC DataPortalENSG00000104435
TCGA cBioPortalSTMN2
AceView (NCBI)STMN2
Genatlas (Paris)STMN2
WikiGenes11075
SOURCE (Princeton)STMN2
Genetics Home Reference (NIH)STMN2
Genomic and cartography
GoldenPath hg38 (UCSC)STMN2  -     chr8:79610814-79666175 +  8q21.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STMN2  -     8q21.13   [Description]    (hg19-Feb_2009)
EnsemblSTMN2 - 8q21.13 [CytoView hg19]  STMN2 - 8q21.13 [CytoView hg38]
Mapping of homologs : NCBISTMN2 [Mapview hg19]  STMN2 [Mapview hg38]
OMIM600621   
Gene and transcription
Genbank (Entrez)AI096716 AK091336 AK292737 AK297485 AK297594
RefSeq transcript (Entrez)NM_001199214 NM_007029
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STMN2
Cluster EST : UnigeneHs.521651 [ NCBI ]
CGAP (NCI)Hs.521651
Alternative Splicing GalleryENSG00000104435
Gene ExpressionSTMN2 [ NCBI-GEO ]   STMN2 [ EBI - ARRAY_EXPRESS ]   STMN2 [ SEEK ]   STMN2 [ MEM ]
Gene Expression Viewer (FireBrowse)STMN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11075
GTEX Portal (Tissue expression)STMN2
Human Protein AtlasENSG00000104435-STMN2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ93045   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ93045  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ93045
Splice isoforms : SwissVarQ93045
PhosPhoSitePlusQ93045
Domaine pattern : Prosite (Expaxy)STATHMIN_1 (PS00563)    STATHMIN_2 (PS01041)    STATHMIN_3 (PS51663)   
Domains : Interpro (EBI)Stathmin-2    Stathmin_CS    Stathmin_fam   
Domain families : Pfam (Sanger)Stathmin (PF00836)   
Domain families : Pfam (NCBI)pfam00836   
Conserved Domain (NCBI)STMN2
DMDM Disease mutations11075
Blocks (Seattle)STMN2
SuperfamilyQ93045
Human Protein Atlas [tissue]ENSG00000104435-STMN2 [tissue]
Peptide AtlasQ93045
HPRD09003
IPIIPI00218667   IPI00983509   IPI00795953   
Protein Interaction databases
DIP (DOE-UCLA)Q93045
IntAct (EBI)Q93045
FunCoupENSG00000104435
BioGRIDSTMN2
STRING (EMBL)STMN2
ZODIACSTMN2
Ontologies - Pathways
QuickGOQ93045
Ontology : AmiGOprotein binding  cytoplasm  endosome  Golgi apparatus  negative regulation of microtubule depolymerization  positive regulation of neuron projection development  negative regulation of neuron projection development  tubulin binding  membrane  lamellipodium  axon  growth cone  negative regulation of microtubule polymerization  positive regulation of microtubule depolymerization  neuron projection  neuronal cell body  calcium-dependent protein binding  perinuclear region of cytoplasm  cellular response to nerve growth factor stimulus  
Ontology : EGO-EBIprotein binding  cytoplasm  endosome  Golgi apparatus  negative regulation of microtubule depolymerization  positive regulation of neuron projection development  negative regulation of neuron projection development  tubulin binding  membrane  lamellipodium  axon  growth cone  negative regulation of microtubule polymerization  positive regulation of microtubule depolymerization  neuron projection  neuronal cell body  calcium-dependent protein binding  perinuclear region of cytoplasm  cellular response to nerve growth factor stimulus  
NDEx NetworkSTMN2
Atlas of Cancer Signalling NetworkSTMN2
Wikipedia pathwaysSTMN2
Orthology - Evolution
OrthoDB11075
GeneTree (enSembl)ENSG00000104435
Phylogenetic Trees/Animal Genes : TreeFamSTMN2
HOVERGENQ93045
HOGENOMQ93045
Homologs : HomoloGeneSTMN2
Homology/Alignments : Family Browser (UCSC)STMN2
Gene fusions - Rearrangements
Fusion : MitelmanTMEM67/STMN2 [8q22.1/8q21.13]  [t(8;8)(q21;q22)]  
Fusion: TCGA_MDACCTMEM67 8q22.1 STMN2 8q21.13 LUAD
Tumor Fusion PortalSTMN2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTMN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STMN2
dbVarSTMN2
ClinVarSTMN2
1000_GenomesSTMN2 
Exome Variant ServerSTMN2
ExAC (Exome Aggregation Consortium)ENSG00000104435
GNOMAD BrowserENSG00000104435
Genetic variants : HAPMAP11075
Genomic Variants (DGV)STMN2 [DGVbeta]
DECIPHERSTMN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTMN2 
Mutations
ICGC Data PortalSTMN2 
TCGA Data PortalSTMN2 
Broad Tumor PortalSTMN2
OASIS PortalSTMN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTMN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTMN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STMN2
DgiDB (Drug Gene Interaction Database)STMN2
DoCM (Curated mutations)STMN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STMN2 (select a term)
intoGenSTMN2
Cancer3DSTMN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600621   
Orphanet
DisGeNETSTMN2
MedgenSTMN2
Genetic Testing Registry STMN2
NextProtQ93045 [Medical]
TSGene11075
GENETestsSTMN2
Target ValidationSTMN2
Huge Navigator STMN2 [HugePedia]
snp3D : Map Gene to Disease11075
BioCentury BCIQSTMN2
ClinGenSTMN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11075
Chemical/Pharm GKB GenePA35540
Clinical trialSTMN2
Miscellaneous
canSAR (ICR)STMN2 (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTMN2
EVEXSTMN2
GoPubMedSTMN2
iHOPSTMN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:37:02 CET 2017

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