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STMN3 (stathmin 3)

Identity

Alias_namesstathmin-like 3
Alias_symbol (synonym)SCLIP
Other alias
HGNC (Hugo) STMN3
LocusID (NCBI) 50861
Atlas_Id 55525
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 63639705 and ends at 63652766 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AL353715.1 () / STMN3 (20q13.33)EIF3K (19q13.2) / STMN3 (20q13.33)TONSL (8q24.3) / STMN3 (20q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Domains : Interpro (EBI)
Nomenclature
HGNC (Hugo)STMN3   15926
Cards
Entrez_Gene (NCBI)STMN3  50861  stathmin 3
AliasesSCLIP
GeneCards (Weizmann)STMN3
Ensembl hg19 (Hinxton)ENSG00000197457 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197457 [Gene_View]  chr20:63639705-63652766 [Contig_View]  STMN3 [Vega]
ICGC DataPortalENSG00000197457
TCGA cBioPortalSTMN3
AceView (NCBI)STMN3
Genatlas (Paris)STMN3
WikiGenes50861
SOURCE (Princeton)STMN3
Genetics Home Reference (NIH)STMN3
Genomic and cartography
GoldenPath hg38 (UCSC)STMN3  -     chr20:63639705-63652766 -  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STMN3  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblSTMN3 - 20q13.33 [CytoView hg19]  STMN3 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBISTMN3 [Mapview hg19]  STMN3 [Mapview hg38]
OMIM608362   
Gene and transcription
Genbank (Entrez)AH007321 AK074860 AK094112 AK131326 AK298903
RefSeq transcript (Entrez)NM_001276310 NM_015894
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STMN3
Cluster EST : UnigeneHs.639609 [ NCBI ]
CGAP (NCI)Hs.639609
Alternative Splicing GalleryENSG00000197457
Gene ExpressionSTMN3 [ NCBI-GEO ]   STMN3 [ EBI - ARRAY_EXPRESS ]   STMN3 [ SEEK ]   STMN3 [ MEM ]
Gene Expression Viewer (FireBrowse)STMN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50861
GTEX Portal (Tissue expression)STMN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZ72   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZ72  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZ72
Splice isoforms : SwissVarQ9NZ72
PhosPhoSitePlusQ9NZ72
Domaine pattern : Prosite (Expaxy)STATHMIN_1 (PS00563)    STATHMIN_2 (PS01041)    STATHMIN_3 (PS51663)   
Stathmin-3    Stathmin_CS    Stathmin_fam   
Domain families : Pfam (Sanger)Stathmin (PF00836)   
Domain families : Pfam (NCBI)pfam00836   
Conserved Domain (NCBI)STMN3
DMDM Disease mutations50861
Blocks (Seattle)STMN3
SuperfamilyQ9NZ72
Human Protein AtlasENSG00000197457
Peptide AtlasQ9NZ72
HPRD16324
IPIIPI00021199   IPI01011391   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZ72
IntAct (EBI)Q9NZ72
FunCoupENSG00000197457
BioGRIDSTMN3
STRING (EMBL)STMN3
ZODIACSTMN3
Ontologies - Pathways
QuickGOQ9NZ72
Ontology : AmiGOcytoplasm  cytoplasm  Golgi apparatus  microtubule depolymerization  nervous system development  tubulin binding  protein domain specific binding  axon  growth cone  regulation of microtubule polymerization or depolymerization  cytoplasmic microtubule organization  neuron projection development  neuron projection development  negative regulation of Rac protein signal transduction  neuron projection  regulation of GTPase activity  regulation of cytoskeleton organization  regulation of cytoskeleton organization  
Ontology : EGO-EBIcytoplasm  cytoplasm  Golgi apparatus  microtubule depolymerization  nervous system development  tubulin binding  protein domain specific binding  axon  growth cone  regulation of microtubule polymerization or depolymerization  cytoplasmic microtubule organization  neuron projection development  neuron projection development  negative regulation of Rac protein signal transduction  neuron projection  regulation of GTPase activity  regulation of cytoskeleton organization  regulation of cytoskeleton organization  
NDEx NetworkSTMN3
Atlas of Cancer Signalling NetworkSTMN3
Wikipedia pathwaysSTMN3
Orthology - Evolution
OrthoDB50861
GeneTree (enSembl)ENSG00000197457
Phylogenetic Trees/Animal Genes : TreeFamSTMN3
HOVERGENQ9NZ72
HOGENOMQ9NZ72
Homologs : HomoloGeneSTMN3
Homology/Alignments : Family Browser (UCSC)STMN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTMN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STMN3
dbVarSTMN3
ClinVarSTMN3
1000_GenomesSTMN3 
Exome Variant ServerSTMN3
ExAC (Exome Aggregation Consortium)STMN3 (select the gene name)
Genetic variants : HAPMAP50861
Genomic Variants (DGV)STMN3 [DGVbeta]
DECIPHERSTMN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTMN3 
Mutations
ICGC Data PortalSTMN3 
TCGA Data PortalSTMN3 
Broad Tumor PortalSTMN3
OASIS PortalSTMN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTMN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTMN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STMN3
DgiDB (Drug Gene Interaction Database)STMN3
DoCM (Curated mutations)STMN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STMN3 (select a term)
intoGenSTMN3
Cancer3DSTMN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608362   
Orphanet
MedgenSTMN3
Genetic Testing Registry STMN3
NextProtQ9NZ72 [Medical]
TSGene50861
GENETestsSTMN3
Target ValidationSTMN3
Huge Navigator STMN3 [HugePedia]
snp3D : Map Gene to Disease50861
BioCentury BCIQSTMN3
ClinGenSTMN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD50861
Chemical/Pharm GKB GenePA38049
Clinical trialSTMN3
Miscellaneous
canSAR (ICR)STMN3 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTMN3
EVEXSTMN3
GoPubMedSTMN3
iHOPSTMN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:08:51 CEST 2017

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