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STMN4 (stathmin 4)

Identity

Alias_namesstathmin-like 4
Alias_symbol (synonym)RB3
Other alias
HGNC (Hugo) STMN4
LocusID (NCBI) 81551
Atlas_Id 74315
Location 8p21.2  [Link to chromosome band 8p21]
Location_base_pair Starts at 27235323 and ends at 27258439 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STMN4   16078
Cards
Entrez_Gene (NCBI)STMN4  81551  stathmin 4
AliasesRB3
GeneCards (Weizmann)STMN4
Ensembl hg19 (Hinxton)ENSG00000015592 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000015592 [Gene_View]  chr8:27235323-27258439 [Contig_View]  STMN4 [Vega]
ICGC DataPortalENSG00000015592
TCGA cBioPortalSTMN4
AceView (NCBI)STMN4
Genatlas (Paris)STMN4
WikiGenes81551
SOURCE (Princeton)STMN4
Genetics Home Reference (NIH)STMN4
Genomic and cartography
GoldenPath hg38 (UCSC)STMN4  -     chr8:27235323-27258439 -  8p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STMN4  -     8p21.2   [Description]    (hg19-Feb_2009)
EnsemblSTMN4 - 8p21.2 [CytoView hg19]  STMN4 - 8p21.2 [CytoView hg38]
Mapping of homologs : NCBISTMN4 [Mapview hg19]  STMN4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI638208 AJ303455 AK225142 AK294023 AK295329
RefSeq transcript (Entrez)NM_001283053 NM_001283054 NM_001283055 NM_030795
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STMN4
Cluster EST : UnigeneHs.734948 [ NCBI ]
CGAP (NCI)Hs.734948
Alternative Splicing GalleryENSG00000015592
Gene ExpressionSTMN4 [ NCBI-GEO ]   STMN4 [ EBI - ARRAY_EXPRESS ]   STMN4 [ SEEK ]   STMN4 [ MEM ]
Gene Expression Viewer (FireBrowse)STMN4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81551
GTEX Portal (Tissue expression)STMN4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H169   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H169  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H169
Splice isoforms : SwissVarQ9H169
PhosPhoSitePlusQ9H169
Domaine pattern : Prosite (Expaxy)STATHMIN_1 (PS00563)    STATHMIN_2 (PS01041)    STATHMIN_3 (PS51663)   
Domains : Interpro (EBI)Stathmin-4    Stathmin_CS    Stathmin_fam   
Domain families : Pfam (Sanger)Stathmin (PF00836)   
Domain families : Pfam (NCBI)pfam00836   
Conserved Domain (NCBI)STMN4
DMDM Disease mutations81551
Blocks (Seattle)STMN4
SuperfamilyQ9H169
Human Protein AtlasENSG00000015592
Peptide AtlasQ9H169
HPRD18120
IPIIPI00006572   IPI00216921   IPI00981149   IPI00789196   IPI00973711   IPI00922779   
Protein Interaction databases
DIP (DOE-UCLA)Q9H169
IntAct (EBI)Q9H169
FunCoupENSG00000015592
BioGRIDSTMN4
STRING (EMBL)STMN4
ZODIACSTMN4
Ontologies - Pathways
QuickGOQ9H169
Ontology : AmiGOcytoplasm  Golgi apparatus  microtubule depolymerization  tubulin binding  axon  growth cone  regulation of microtubule polymerization or depolymerization  neuron projection development  neuron projection  regulation of cytoskeleton organization  
Ontology : EGO-EBIcytoplasm  Golgi apparatus  microtubule depolymerization  tubulin binding  axon  growth cone  regulation of microtubule polymerization or depolymerization  neuron projection development  neuron projection  regulation of cytoskeleton organization  
NDEx NetworkSTMN4
Atlas of Cancer Signalling NetworkSTMN4
Wikipedia pathwaysSTMN4
Orthology - Evolution
OrthoDB81551
GeneTree (enSembl)ENSG00000015592
Phylogenetic Trees/Animal Genes : TreeFamSTMN4
HOVERGENQ9H169
HOGENOMQ9H169
Homologs : HomoloGeneSTMN4
Homology/Alignments : Family Browser (UCSC)STMN4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTMN4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STMN4
dbVarSTMN4
ClinVarSTMN4
1000_GenomesSTMN4 
Exome Variant ServerSTMN4
ExAC (Exome Aggregation Consortium)STMN4 (select the gene name)
Genetic variants : HAPMAP81551
Genomic Variants (DGV)STMN4 [DGVbeta]
DECIPHERSTMN4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTMN4 
Mutations
ICGC Data PortalSTMN4 
TCGA Data PortalSTMN4 
Broad Tumor PortalSTMN4
OASIS PortalSTMN4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTMN4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTMN4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STMN4
DgiDB (Drug Gene Interaction Database)STMN4
DoCM (Curated mutations)STMN4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STMN4 (select a term)
intoGenSTMN4
Cancer3DSTMN4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSTMN4
Genetic Testing Registry STMN4
NextProtQ9H169 [Medical]
TSGene81551
GENETestsSTMN4
Target ValidationSTMN4
Huge Navigator STMN4 [HugePedia]
snp3D : Map Gene to Disease81551
BioCentury BCIQSTMN4
ClinGenSTMN4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81551
Chemical/Pharm GKB GenePA38089
Clinical trialSTMN4
Miscellaneous
canSAR (ICR)STMN4 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTMN4
EVEXSTMN4
GoPubMedSTMN4
iHOPSTMN4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed May 31 15:44:24 CEST 2017

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