Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

STMND1 (stathmin domain containing 1)

Identity

Alias_symbol (synonym)FLJ23152
Other alias-
HGNC (Hugo) STMND1
LocusID (NCBI) 401236
Atlas_Id 74316
Location 6p22.3  [Link to chromosome band 6p22]
Location_base_pair Starts at 17102258 and ends at 17131372 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STMND1   44668
Cards
Entrez_Gene (NCBI)STMND1  401236  stathmin domain containing 1
Aliases
GeneCards (Weizmann)STMND1
Ensembl hg19 (Hinxton)ENSG00000230873 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230873 [Gene_View]  ENSG00000230873 [Sequence]  chr6:17102258-17131372 [Contig_View]  STMND1 [Vega]
ICGC DataPortalENSG00000230873
TCGA cBioPortalSTMND1
AceView (NCBI)STMND1
Genatlas (Paris)STMND1
WikiGenes401236
SOURCE (Princeton)STMND1
Genetics Home Reference (NIH)STMND1
Genomic and cartography
GoldenPath hg38 (UCSC)STMND1  -     chr6:17102258-17131372 +  6p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STMND1  -     6p22.3   [Description]    (hg19-Feb_2009)
EnsemblSTMND1 - 6p22.3 [CytoView hg19]  STMND1 - 6p22.3 [CytoView hg38]
Mapping of homologs : NCBISTMND1 [Mapview hg19]  STMND1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026805 DT932725 DV080442
RefSeq transcript (Entrez)NM_001190766
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STMND1
Cluster EST : UnigeneHs.677399 [ NCBI ]
CGAP (NCI)Hs.677399
Alternative Splicing GalleryENSG00000230873
Gene ExpressionSTMND1 [ NCBI-GEO ]   STMND1 [ EBI - ARRAY_EXPRESS ]   STMND1 [ SEEK ]   STMND1 [ MEM ]
Gene Expression Viewer (FireBrowse)STMND1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401236
GTEX Portal (Tissue expression)STMND1
Human Protein AtlasENSG00000230873-STMND1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtH3BQB6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtH3BQB6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProH3BQB6
Splice isoforms : SwissVarH3BQB6
PhosPhoSitePlusH3BQB6
Domaine pattern : Prosite (Expaxy)STATHMIN_3 (PS51663)   
Domains : Interpro (EBI)Stathmin_fam   
Domain families : Pfam (Sanger)Stathmin (PF00836)   
Domain families : Pfam (NCBI)pfam00836   
Conserved Domain (NCBI)STMND1
DMDM Disease mutations401236
Blocks (Seattle)STMND1
SuperfamilyH3BQB6
Human Protein Atlas [tissue]ENSG00000230873-STMND1 [tissue]
Peptide AtlasH3BQB6
IPIIPI00784267   
Protein Interaction databases
DIP (DOE-UCLA)H3BQB6
IntAct (EBI)H3BQB6
FunCoupENSG00000230873
BioGRIDSTMND1
STRING (EMBL)STMND1
ZODIACSTMND1
Ontologies - Pathways
QuickGOH3BQB6
Ontology : AmiGOregulation of microtubule polymerization or depolymerization  
Ontology : EGO-EBIregulation of microtubule polymerization or depolymerization  
NDEx NetworkSTMND1
Atlas of Cancer Signalling NetworkSTMND1
Wikipedia pathwaysSTMND1
Orthology - Evolution
OrthoDB401236
GeneTree (enSembl)ENSG00000230873
Phylogenetic Trees/Animal Genes : TreeFamSTMND1
HOVERGENH3BQB6
HOGENOMH3BQB6
Homologs : HomoloGeneSTMND1
Homology/Alignments : Family Browser (UCSC)STMND1
Gene fusions - Rearrangements
Fusion : QuiverSTMND1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTMND1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STMND1
dbVarSTMND1
ClinVarSTMND1
1000_GenomesSTMND1 
Exome Variant ServerSTMND1
ExAC (Exome Aggregation Consortium)ENSG00000230873
GNOMAD BrowserENSG00000230873
Varsome BrowserSTMND1
Genetic variants : HAPMAP401236
Genomic Variants (DGV)STMND1 [DGVbeta]
DECIPHERSTMND1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTMND1 
Mutations
ICGC Data PortalSTMND1 
TCGA Data PortalSTMND1 
Broad Tumor PortalSTMND1
OASIS PortalSTMND1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSTMND1
BioMutasearch STMND1
DgiDB (Drug Gene Interaction Database)STMND1
DoCM (Curated mutations)STMND1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STMND1 (select a term)
intoGenSTMND1
Cancer3DSTMND1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSTMND1
MedgenSTMND1
Genetic Testing Registry STMND1
NextProtH3BQB6 [Medical]
TSGene401236
GENETestsSTMND1
Target ValidationSTMND1
Huge Navigator STMND1 [HugePedia]
snp3D : Map Gene to Disease401236
BioCentury BCIQSTMND1
ClinGenSTMND1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401236
Chemical/Pharm GKB GenePA166049152
Clinical trialSTMND1
Miscellaneous
canSAR (ICR)STMND1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTMND1
EVEXSTMND1
GoPubMedSTMND1
iHOPSTMND1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:33:33 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.