Atlas of Genetics and Cytogenetics in Oncology and Haematology

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STN1 (STN1 subunit of CST complex)

Identity

Alias (NCBI)AAF-44
AAF44
OBFC1
RPA-32
bA541N10.2
HGNC (Hugo) STN1
HGNC Alias symbFLJ22559
bA541N10.2
HGNC Previous nameOBFC1
HGNC Previous nameoligonucleotide/oligosaccharide binding fold containing 1
 STN1, CST complex subunit
LocusID (NCBI) 79991
Atlas_Id 57880
Location 10q24.33  [Link to chromosome band 10q24]
Location_base_pair Starts at 103877569 and ends at 103918184 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)STN1   26200
Cards
Entrez_Gene (NCBI)STN1    STN1 subunit of CST complex
AliasesAAF-44; AAF44; OBFC1; RPA-32; 
bA541N10.2
GeneCards (Weizmann)STN1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr10:103877569-103918184 [Contig_View]  STN1 [Vega]
TCGA cBioPortalSTN1
AceView (NCBI)STN1
Genatlas (Paris)STN1
SOURCE (Princeton)STN1
Genetics Home Reference (NIH)STN1
Genomic and cartography
GoldenPath hg38 (UCSC)STN1  -     chr10:103877569-103918184 -  10q24.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STN1  -     10q24.33   [Description]    (hg19-Feb_2009)
GoldenPathSTN1 - 10q24.33 [CytoView hg19]  STN1 - 10q24.33 [CytoView hg38]
genome Data Viewer NCBISTN1 [Mapview hg19]  
OMIM613128   617341   
Gene and transcription
Genbank (Entrez)AK026212 AK057720 BC017400
RefSeq transcript (Entrez)NM_024928
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STN1
Gene ExpressionSTN1 [ NCBI-GEO ]   STN1 [ EBI - ARRAY_EXPRESS ]   STN1 [ SEEK ]   STN1 [ MEM ]
Gene Expression Viewer (FireBrowse)STN1 [ Firebrowse - Broad ]
GenevisibleExpression of STN1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79991
GTEX Portal (Tissue expression)STN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H668   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H668  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H668
Splice isoforms : SwissVarQ9H668
PhosPhoSitePlusQ9H668
Domains : Interpro (EBI)CST_STN1_C    CST_Stn1_N_sf    NA-bd_OB-fold    NA-bd_OB_tRNA    RFA2-like    Stn1    WH-like_DNA-bd_sf    WH_DNA-bd_sf   
Domain families : Pfam (Sanger)STN1_2 (PF09170)    tRNA_anti-codon (PF01336)   
Domain families : Pfam (NCBI)pfam09170    pfam01336   
Conserved Domain (NCBI)STN1
Blocks (Seattle)STN1
PDB (RSDB)4JOI    4JQF   
PDB Europe4JOI    4JQF   
PDB (PDBSum)4JOI    4JQF   
PDB (IMB)4JOI    4JQF   
Structural Biology KnowledgeBase4JOI    4JQF   
SCOP (Structural Classification of Proteins)4JOI    4JQF   
CATH (Classification of proteins structures)4JOI    4JQF   
SuperfamilyQ9H668
Peptide AtlasQ9H668
IPIIPI00554443   
Protein Interaction databases
DIP (DOE-UCLA)Q9H668
IntAct (EBI)Q9H668
BioGRIDSTN1
STRING (EMBL)STN1
ZODIACSTN1
Ontologies - Pathways
QuickGOQ9H668
Ontology : AmiGOtelomere maintenance  nuclear chromosome, telomeric region  nuclear chromosome, telomeric region  fibrillar center  single-stranded DNA binding  single-stranded DNA binding  protein binding  nucleus  nucleus  nucleus  nucleoplasm  telomere maintenance via telomere lengthening  telomere capping  negative regulation of telomere maintenance via telomerase  telomeric DNA binding  single-stranded telomeric DNA binding  intracellular membrane-bounded organelle  intermediate filament cytoskeleton  positive regulation of DNA replication  CST complex  
Ontology : EGO-EBItelomere maintenance  nuclear chromosome, telomeric region  nuclear chromosome, telomeric region  fibrillar center  single-stranded DNA binding  single-stranded DNA binding  protein binding  nucleus  nucleus  nucleus  nucleoplasm  telomere maintenance via telomere lengthening  telomere capping  negative regulation of telomere maintenance via telomerase  telomeric DNA binding  single-stranded telomeric DNA binding  intracellular membrane-bounded organelle  intermediate filament cytoskeleton  positive regulation of DNA replication  CST complex  
NDEx NetworkSTN1
Atlas of Cancer Signalling NetworkSTN1
Wikipedia pathwaysSTN1
Orthology - Evolution
OrthoDB79991
Phylogenetic Trees/Animal Genes : TreeFamSTN1
HOGENOMQ9H668
Homologs : HomoloGeneSTN1
Homology/Alignments : Family Browser (UCSC)STN1
Gene fusions - Rearrangements
Fusion : QuiverSTN1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTN1 [hg38]
dbVarSTN1
ClinVarSTN1
MonarchSTN1
1000_GenomesSTN1 
Exome Variant ServerSTN1
Varsome BrowserSTN1
Genomic Variants (DGV)STN1 [DGVbeta]
DECIPHERSTN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTN1 
Mutations
ICGC Data PortalSTN1 
TCGA Data PortalSTN1 
Broad Tumor PortalSTN1
OASIS PortalSTN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTN1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSTN1
Mutations and Diseases : HGMDSTN1
BioMutasearch STN1
DgiDB (Drug Gene Interaction Database)STN1
DoCM (Curated mutations)STN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STN1 (select a term)
intoGenSTN1
Cancer3DSTN1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613128    617341   
Orphanet
DisGeNETSTN1
MedgenSTN1
Genetic Testing Registry STN1
NextProtQ9H668 [Medical]
GENETestsSTN1
Target ValidationSTN1
Huge Navigator STN1 [HugePedia]
ClinGenSTN1
Clinical trials, drugs, therapy
MyCancerGenomeSTN1
Protein Interactions : CTD
Pharm GKB GenePA134987118
PharosQ9H668
Clinical trialSTN1
Miscellaneous
canSAR (ICR)STN1 (select the gene name)
HarmonizomeSTN1
DataMed IndexSTN1
Probes
Litterature
PubMed61 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSTN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jan 1 18:39:45 CET 2021
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