Atlas of Genetics and Cytogenetics in Oncology and Haematology

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STN1 (STN1, CST complex subunit)

Identity

Other aliasAAF-44
AAF44
OBFC1
RPA-32
bA541N10.2
HGNC (Hugo) STN1
LocusID (NCBI) 79991
Atlas_Id 78754
Location 10q24.33  [Link to chromosome band 10q24]
Location_base_pair Starts at 103877560 and ends at 103918287 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)STN1   26200
Cards
Entrez_Gene (NCBI)STN1  79991  STN1, CST complex subunit
AliasesAAF-44; AAF44; OBFC1; RPA-32; 
bA541N10.2
GeneCards (Weizmann)STN1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:103877560-103918287 [Contig_View]  STN1 [Vega]
TCGA cBioPortalSTN1
AceView (NCBI)STN1
Genatlas (Paris)STN1
WikiGenes79991
SOURCE (Princeton)STN1
Genetics Home Reference (NIH)STN1
Genomic and cartography
GoldenPath hg38 (UCSC)STN1  -     chr10:103877560-103918287 -  10q24.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STN1  -     10q24.33   [Description]    (hg19-Feb_2009)
EnsemblSTN1 - 10q24.33 [CytoView hg19]  STN1 - 10q24.33 [CytoView hg38]
Mapping of homologs : NCBISTN1 [Mapview hg19]  STN1 [Mapview hg38]
OMIM613128   617341   
Gene and transcription
Genbank (Entrez)AK026212 AK057720 BC017400 HQ448216
RefSeq transcript (Entrez)NM_024928
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STN1
Cluster EST : UnigeneHs.62314 [ NCBI ]
CGAP (NCI)Hs.62314
Gene ExpressionSTN1 [ NCBI-GEO ]   STN1 [ EBI - ARRAY_EXPRESS ]   STN1 [ SEEK ]   STN1 [ MEM ]
Gene Expression Viewer (FireBrowse)STN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79991
GTEX Portal (Tissue expression)STN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H668   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H668  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H668
Splice isoforms : SwissVarQ9H668
PhosPhoSitePlusQ9H668
Domains : Interpro (EBI)CST_STN1_C    NA-bd_OB-fold    NA-bd_OB_tRNA    Stn1    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)STN1_2 (PF09170)    tRNA_anti-codon (PF01336)   
Domain families : Pfam (NCBI)pfam09170    pfam01336   
Conserved Domain (NCBI)STN1
DMDM Disease mutations79991
Blocks (Seattle)STN1
PDB (SRS)4JOI    4JQF   
PDB (PDBSum)4JOI    4JQF   
PDB (IMB)4JOI    4JQF   
PDB (RSDB)4JOI    4JQF   
Structural Biology KnowledgeBase4JOI    4JQF   
SCOP (Structural Classification of Proteins)4JOI    4JQF   
CATH (Classification of proteins structures)4JOI    4JQF   
SuperfamilyQ9H668
Peptide AtlasQ9H668
HPRD14872
IPIIPI00554443   
Protein Interaction databases
DIP (DOE-UCLA)Q9H668
IntAct (EBI)Q9H668
BioGRIDSTN1
STRING (EMBL)STN1
ZODIACSTN1
Ontologies - Pathways
QuickGOQ9H668
Ontology : AmiGOtelomere maintenance  nuclear chromosome, telomeric region  fibrillar center  single-stranded DNA binding  protein binding  nucleus  nucleus  nucleoplasm  telomere maintenance via telomere lengthening  telomere capping  negative regulation of telomere maintenance via telomerase  telomeric DNA binding  single-stranded telomeric DNA binding  intracellular membrane-bounded organelle  intermediate filament cytoskeleton  positive regulation of DNA replication  CST complex  
Ontology : EGO-EBItelomere maintenance  nuclear chromosome, telomeric region  fibrillar center  single-stranded DNA binding  protein binding  nucleus  nucleus  nucleoplasm  telomere maintenance via telomere lengthening  telomere capping  negative regulation of telomere maintenance via telomerase  telomeric DNA binding  single-stranded telomeric DNA binding  intracellular membrane-bounded organelle  intermediate filament cytoskeleton  positive regulation of DNA replication  CST complex  
NDEx NetworkSTN1
Atlas of Cancer Signalling NetworkSTN1
Wikipedia pathwaysSTN1
Orthology - Evolution
OrthoDB79991
Phylogenetic Trees/Animal Genes : TreeFamSTN1
HOVERGENQ9H668
HOGENOMQ9H668
Homologs : HomoloGeneSTN1
Homology/Alignments : Family Browser (UCSC)STN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STN1
dbVarSTN1
ClinVarSTN1
1000_GenomesSTN1 
Exome Variant ServerSTN1
ExAC (Exome Aggregation Consortium)STN1 (select the gene name)
Genetic variants : HAPMAP79991
Genomic Variants (DGV)STN1 [DGVbeta]
DECIPHERSTN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTN1 
Mutations
ICGC Data PortalSTN1 
TCGA Data PortalSTN1 
Broad Tumor PortalSTN1
OASIS PortalSTN1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSTN1
BioMutasearch STN1
DgiDB (Drug Gene Interaction Database)STN1
DoCM (Curated mutations)STN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STN1 (select a term)
intoGenSTN1
Cancer3DSTN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613128    617341   
Orphanet
MedgenSTN1
Genetic Testing Registry STN1
NextProtQ9H668 [Medical]
TSGene79991
GENETestsSTN1
Target ValidationSTN1
Huge Navigator STN1 [HugePedia]
snp3D : Map Gene to Disease79991
BioCentury BCIQSTN1
ClinGenSTN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79991
Chemical/Pharm GKB GenePA134987118
Clinical trialSTN1
Miscellaneous
canSAR (ICR)STN1 (select the gene name)
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTN1
EVEXSTN1
GoPubMedSTN1
iHOPSTN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:39 CEST 2017
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