Atlas of Genetics and Cytogenetics in Oncology and Haematology


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STOML1 (stomatin (EPB72)-like 1)

Identity

Other namesSLP-1
STORP
hUNC-24
HGNC (Hugo) STOML1
LocusID (NCBI) 9399
Location 15q24.1
Location_base_pair Starts at 74275559 and ends at 74284689 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)STOML1   14560
Cards
Entrez_Gene (NCBI)STOML1  9399  stomatin (EPB72)-like 1
GeneCards (Weizmann)STOML1
Ensembl (Hinxton)ENSG00000067221 [Gene_View]  chr15:74275559-74284689 [Contig_View]  STOML1 [Vega]
ICGC DataPortalENSG00000067221
AceView (NCBI)STOML1
Genatlas (Paris)STOML1
WikiGenes9399
SOURCE (Princeton)NM_001256672 NM_001256673 NM_001256674 NM_001256675 NM_001256676 NM_001256677 NM_004809
Genomic and cartography
GoldenPath (UCSC)STOML1  -  15q24.1   chr15:74275559-74284689 -  15q24.1   [Description]    (hg19-Feb_2009)
EnsemblSTOML1 - 15q24.1 [CytoView]
Mapping of homologs : NCBISTOML1 [Mapview]
OMIM608326   
Gene and transcription
Genbank (Entrez)AF074953 AF111800 AF156557 AK075244 AK091531
RefSeq transcript (Entrez)NM_001256672 NM_001256673 NM_001256674 NM_001256675 NM_001256676 NM_001256677 NM_004809
RefSeq genomic (Entrez)AC_000147 NC_000015 NC_018926 NT_010194 NW_001838218 NW_004929398
Consensus coding sequences : CCDS (NCBI)STOML1
Cluster EST : UnigeneHs.194816 [ NCBI ]
CGAP (NCI)Hs.194816
Alternative Splicing : Fast-db (Paris)GSHG0010577
Alternative Splicing GalleryENSG00000067221
Gene ExpressionSTOML1 [ NCBI-GEO ]     STOML1 [ SEEK ]   STOML1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBI4 (Uniprot)
NextProtQ9UBI4  [Medical]
With graphics : InterProQ9UBI4
Splice isoforms : SwissVarQ9UBI4 (Swissvar)
Domains : Interpro (EBI)Band_7    SCP2_sterol-bd_dom    SLP1    Stomatin_fam   
Related proteins : CluSTrQ9UBI4
Domain families : Pfam (Sanger)Band_7 (PF01145)    SCP2 (PF02036)   
Domain families : Pfam (NCBI)pfam01145    pfam02036   
Domain families : Smart (EMBL)PHB (SM00244)  
DMDM Disease mutations9399
Blocks (Seattle)Q9UBI4
Human Protein AtlasENSG00000067221
Peptide AtlasQ9UBI4
HPRD16314
IPIIPI00007806   IPI00292277   IPI01014553   IPI00607647   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBI4
IntAct (EBI)Q9UBI4
FunCoupENSG00000067221
BioGRIDSTOML1
IntegromeDBSTOML1
STRING (EMBL)STOML1
Ontologies - Pathways
QuickGOQ9UBI4
Ontology : AmiGOmolecular_function  protein binding  cellular_component  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  biological_process  integral component of membrane  
Protein Interaction DatabaseSTOML1
Wikipedia pathwaysSTOML1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)STOML1
SNP (GeneSNP Utah)STOML1
SNP : HGBaseSTOML1
Genetic variants : HAPMAPSTOML1
1000_GenomesSTOML1 
ICGC programENSG00000067221 
CONAN: Copy Number AnalysisSTOML1 
Somatic Mutations in Cancer : COSMICSTOML1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
DECIPHER (Syndromes)15:74275559-74284689
Mutations and Diseases : HGMDSTOML1
OMIM608326   
MedgenSTOML1
GENETestsSTOML1
Disease Genetic AssociationSTOML1
Huge Navigator STOML1 [HugePedia]  STOML1 [HugeCancerGEM]
Genomic VariantsSTOML1  STOML1 [DGVbeta]
Exome VariantSTOML1
dbVarSTOML1
ClinVarSTOML1
snp3D : Map Gene to Disease9399
General knowledge
Homologs : HomoloGeneSTOML1
Homology/Alignments : Family Browser (UCSC)STOML1
Phylogenetic Trees/Animal Genes : TreeFamSTOML1
Chemical/Protein Interactions : CTD9399
Chemical/Pharm GKB GenePA37898
Clinical trialSTOML1
Cancer Resource (Charite)ENSG00000067221
Other databases
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
CoreMineSTOML1
GoPubMedSTOML1
iHOPSTOML1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 17:59:50 CET 2014

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