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STOML1 (stomatin like 1)

Identity

Other namesSLP-1
STORP
hUNC-24
HGNC (Hugo) STOML1
LocusID (NCBI) 9399
Atlas_Id 42444
Location 15q24.1
Location_base_pair Starts at 74275559 and ends at 74284689 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
METTL17 (14q11.2) / STOML1 (15q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STOML1   14560
Cards
Entrez_Gene (NCBI)STOML1  9399  stomatin like 1
GeneCards (Weizmann)STOML1
Ensembl hg19 (Hinxton)ENSG00000067221 [Gene_View]  chr15:74275559-74284689 [Contig_View]  STOML1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000067221 [Gene_View]  chr15:74275559-74284689 [Contig_View]  STOML1 [Vega]
ICGC DataPortalENSG00000067221
TCGA cBioPortalSTOML1
AceView (NCBI)STOML1
Genatlas (Paris)STOML1
WikiGenes9399
SOURCE (Princeton)STOML1
Genomic and cartography
GoldenPath hg19 (UCSC)STOML1  -     chr15:74275559-74284689 -  15q24.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)STOML1  -     15q24.1   [Description]    (hg38-Dec_2013)
EnsemblSTOML1 - 15q24.1 [CytoView hg19]  STOML1 - 15q24.1 [CytoView hg38]
Mapping of homologs : NCBISTOML1 [Mapview hg19]  STOML1 [Mapview hg38]
OMIM608326   
Gene and transcription
Genbank (Entrez)AF074953 AF111800 AF156557 AK075244 AK091531
RefSeq transcript (Entrez)NM_001256672 NM_001256673 NM_001256674 NM_001256675 NM_001256676 NM_001256677 NM_004809
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)STOML1
Cluster EST : UnigeneHs.194816 [ NCBI ]
CGAP (NCI)Hs.194816
Alternative Splicing GalleryENSG00000067221
Gene ExpressionSTOML1 [ NCBI-GEO ]   STOML1 [ EBI - ARRAY_EXPRESS ]   STOML1 [ SEEK ]   STOML1 [ MEM ]
Gene Expression Viewer (FireBrowse)STOML1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9399
GTEX Portal (Tissue expression)STOML1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBI4 (Uniprot)
NextProtQ9UBI4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBI4
Splice isoforms : SwissVarQ9UBI4 (Swissvar)
PhosPhoSitePlusQ9UBI4
Domains : Interpro (EBI)Band_7    SCP2_sterol-bd_dom    SLP1    Stomatin_fam   
Domain families : Pfam (Sanger)Band_7 (PF01145)    SCP2 (PF02036)   
Domain families : Pfam (NCBI)pfam01145    pfam02036   
Domain families : Smart (EMBL)PHB (SM00244)  
DMDM Disease mutations9399
Blocks (Seattle)STOML1
SuperfamilyQ9UBI4
Human Protein AtlasENSG00000067221
Peptide AtlasQ9UBI4
HPRD16314
IPIIPI00007806   IPI00292277   IPI01014553   IPI00607647   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBI4
IntAct (EBI)Q9UBI4
FunCoupENSG00000067221
BioGRIDSTOML1
STRING (EMBL)STOML1
ZODIACSTOML1
Ontologies - Pathways
QuickGOQ9UBI4
Ontology : AmiGOmolecular_function  protein binding  cellular_component  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  biological_process  integral component of membrane  
NDEx Network
Atlas of Cancer Signalling NetworkSTOML1
Wikipedia pathwaysSTOML1
Orthology - Evolution
OrthoDB9399
GeneTree (enSembl)ENSG00000067221
Phylogenetic Trees/Animal Genes : TreeFamSTOML1
Homologs : HomoloGeneSTOML1
Homology/Alignments : Family Browser (UCSC)STOML1
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSTOML1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STOML1
dbVarSTOML1
ClinVarSTOML1
1000_GenomesSTOML1 
Exome Variant ServerSTOML1
ExAC (Exome Aggregation Consortium)STOML1 (select the gene name)
Genetic variants : HAPMAP9399
Genomic Variants (DGV)STOML1 [DGVbeta]
Mutations
ICGC Data PortalSTOML1 
TCGA Data PortalSTOML1 
Broad Tumor PortalSTOML1
OASIS PortalSTOML1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTOML1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STOML1
DgiDB (Drug Gene Interaction Database)STOML1
DoCM (Curated mutations)STOML1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STOML1 (select a term)
intoGenSTOML1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)15:74275559-74284689  ENSG00000067221
CONAN: Copy Number AnalysisSTOML1 
Mutations and Diseases : HGMDSTOML1
OMIM608326   
MedgenSTOML1
Genetic Testing Registry STOML1
NextProtQ9UBI4 [Medical]
TSGene9399
GENETestsSTOML1
Huge Navigator STOML1 [HugePedia]
snp3D : Map Gene to Disease9399
BioCentury BCIQSTOML1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9399
Chemical/Pharm GKB GenePA37898
Clinical trialSTOML1
Miscellaneous
canSAR (ICR)STOML1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTOML1
EVEXSTOML1
GoPubMedSTOML1
iHOPSTOML1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun May 8 19:07:45 CEST 2016

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