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STOML3 (stomatin like 3)

Identity

Alias_namesstomatin (EPB72)-like 3
Alias_symbol (synonym)SRO
Epb7.2l
Other alias
HGNC (Hugo) STOML3
LocusID (NCBI) 161003
Atlas_Id 52823
Location 13q13.3  [Link to chromosome band 13q13]
Location_base_pair Starts at 39540062 and ends at 39564996 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KDM6A (Xp11.3) / STOML3 (13q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STOML3   19420
Cards
Entrez_Gene (NCBI)STOML3  161003  stomatin like 3
AliasesEpb7.2l; SRO
GeneCards (Weizmann)STOML3
Ensembl hg19 (Hinxton)ENSG00000133115 [Gene_View]  chr13:39540062-39564996 [Contig_View]  STOML3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000133115 [Gene_View]  chr13:39540062-39564996 [Contig_View]  STOML3 [Vega]
ICGC DataPortalENSG00000133115
TCGA cBioPortalSTOML3
AceView (NCBI)STOML3
Genatlas (Paris)STOML3
WikiGenes161003
SOURCE (Princeton)STOML3
Genetics Home Reference (NIH)STOML3
Genomic and cartography
GoldenPath hg19 (UCSC)STOML3  -     chr13:39540062-39564996 -  13q13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)STOML3  -     13q13.3   [Description]    (hg38-Dec_2013)
EnsemblSTOML3 - 13q13.3 [CytoView hg19]  STOML3 - 13q13.3 [CytoView hg38]
Mapping of homologs : NCBISTOML3 [Mapview hg19]  STOML3 [Mapview hg38]
OMIM608327   
Gene and transcription
Genbank (Entrez)AK304159 AK313632 BC025760 BM982114 DB200356
RefSeq transcript (Entrez)NM_001144033 NM_145286
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)STOML3
Cluster EST : UnigeneHs.327794 [ NCBI ]
CGAP (NCI)Hs.327794
Alternative Splicing GalleryENSG00000133115
Gene ExpressionSTOML3 [ NCBI-GEO ]   STOML3 [ EBI - ARRAY_EXPRESS ]   STOML3 [ SEEK ]   STOML3 [ MEM ]
Gene Expression Viewer (FireBrowse)STOML3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)161003
GTEX Portal (Tissue expression)STOML3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAV4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAV4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAV4
Splice isoforms : SwissVarQ8TAV4
PhosPhoSitePlusQ8TAV4
Domaine pattern : Prosite (Expaxy)BAND_7 (PS01270)   
Domains : Interpro (EBI)Band_7    Band_7/stomatin-like_CS    SLP3    Stomatin_fam   
Domain families : Pfam (Sanger)Band_7 (PF01145)   
Domain families : Pfam (NCBI)pfam01145   
Domain families : Smart (EMBL)PHB (SM00244)  
Conserved Domain (NCBI)STOML3
DMDM Disease mutations161003
Blocks (Seattle)STOML3
SuperfamilyQ8TAV4
Human Protein AtlasENSG00000133115
Peptide AtlasQ8TAV4
HPRD16315
IPIIPI00152125   IPI00921599   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAV4
IntAct (EBI)Q8TAV4
FunCoupENSG00000133115
BioGRIDSTOML3
STRING (EMBL)STOML3
ZODIACSTOML3
Ontologies - Pathways
QuickGOQ8TAV4
Ontology : AmiGOmolecular_function  cellular_component  plasma membrane  cilium  signal transduction  biological_process  integral component of membrane  membrane raft  
Ontology : EGO-EBImolecular_function  cellular_component  plasma membrane  cilium  signal transduction  biological_process  integral component of membrane  membrane raft  
NDEx NetworkSTOML3
Atlas of Cancer Signalling NetworkSTOML3
Wikipedia pathwaysSTOML3
Orthology - Evolution
OrthoDB161003
GeneTree (enSembl)ENSG00000133115
Phylogenetic Trees/Animal Genes : TreeFamSTOML3
HOVERGENQ8TAV4
HOGENOMQ8TAV4
Homologs : HomoloGeneSTOML3
Homology/Alignments : Family Browser (UCSC)STOML3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTOML3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STOML3
dbVarSTOML3
ClinVarSTOML3
1000_GenomesSTOML3 
Exome Variant ServerSTOML3
ExAC (Exome Aggregation Consortium)STOML3 (select the gene name)
Genetic variants : HAPMAP161003
Genomic Variants (DGV)STOML3 [DGVbeta]
DECIPHER (Syndromes)13:39540062-39564996  ENSG00000133115
CONAN: Copy Number AnalysisSTOML3 
Mutations
ICGC Data PortalSTOML3 
TCGA Data PortalSTOML3 
Broad Tumor PortalSTOML3
OASIS PortalSTOML3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTOML3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTOML3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STOML3
DgiDB (Drug Gene Interaction Database)STOML3
DoCM (Curated mutations)STOML3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STOML3 (select a term)
intoGenSTOML3
Cancer3DSTOML3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608327   
Orphanet
MedgenSTOML3
Genetic Testing Registry STOML3
NextProtQ8TAV4 [Medical]
TSGene161003
GENETestsSTOML3
Huge Navigator STOML3 [HugePedia]
snp3D : Map Gene to Disease161003
BioCentury BCIQSTOML3
ClinGenSTOML3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD161003
Chemical/Pharm GKB GenePA134939552
Clinical trialSTOML3
Miscellaneous
canSAR (ICR)STOML3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTOML3
EVEXSTOML3
GoPubMedSTOML3
iHOPSTOML3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:21:18 CEST 2017

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