Atlas of Genetics and Cytogenetics in Oncology and Haematology


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STOX1 (storkhead box 1)

Identity

Alias_namesC10orf24
chromosome 10 open reading frame 24
Alias_symbol (synonym)FLJ25162
Other alias
HGNC (Hugo) STOX1
LocusID (NCBI) 219736
Atlas_Id 56260
Location 10q22.1  [Link to chromosome band 10q22]
Location_base_pair Starts at 68827537 and ends at 68893060 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STOX1   23508
Cards
Entrez_Gene (NCBI)STOX1  219736  storkhead box 1
AliasesC10orf24
GeneCards (Weizmann)STOX1
Ensembl hg19 (Hinxton)ENSG00000165730 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165730 [Gene_View]  chr10:68827537-68893060 [Contig_View]  STOX1 [Vega]
ICGC DataPortalENSG00000165730
TCGA cBioPortalSTOX1
AceView (NCBI)STOX1
Genatlas (Paris)STOX1
WikiGenes219736
SOURCE (Princeton)STOX1
Genetics Home Reference (NIH)STOX1
Genomic and cartography
GoldenPath hg38 (UCSC)STOX1  -     chr10:68827537-68893060 +  10q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STOX1  -     10q22.1   [Description]    (hg19-Feb_2009)
EnsemblSTOX1 - 10q22.1 [CytoView hg19]  STOX1 - 10q22.1 [CytoView hg38]
Mapping of homologs : NCBISTOX1 [Mapview hg19]  STOX1 [Mapview hg38]
OMIM609397   609404   
Gene and transcription
Genbank (Entrez)AK057864 AK057891 AK124681 AK127878 AW086180
RefSeq transcript (Entrez)NM_001130159 NM_001130160 NM_001130161 NM_001130162 NM_152709
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STOX1
Cluster EST : UnigeneHs.37636 [ NCBI ]
CGAP (NCI)Hs.37636
Alternative Splicing GalleryENSG00000165730
Gene ExpressionSTOX1 [ NCBI-GEO ]   STOX1 [ EBI - ARRAY_EXPRESS ]   STOX1 [ SEEK ]   STOX1 [ MEM ]
Gene Expression Viewer (FireBrowse)STOX1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219736
GTEX Portal (Tissue expression)STOX1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZVD7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZVD7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZVD7
Splice isoforms : SwissVarQ6ZVD7
PhosPhoSitePlusQ6ZVD7
Domains : Interpro (EBI)Storkhead-box_winged-helix   
Domain families : Pfam (Sanger)Stork_head (PF10264)   
Domain families : Pfam (NCBI)pfam10264   
Conserved Domain (NCBI)STOX1
DMDM Disease mutations219736
Blocks (Seattle)STOX1
SuperfamilyQ6ZVD7
Human Protein AtlasENSG00000165730
Peptide AtlasQ6ZVD7
HPRD18579
IPIIPI00065183   IPI00655779   IPI00654753   IPI00910175   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZVD7
IntAct (EBI)Q6ZVD7
FunCoupENSG00000165730
BioGRIDSTOX1
STRING (EMBL)STOX1
ZODIACSTOX1
Ontologies - Pathways
QuickGOQ6ZVD7
Ontology : AmiGORNA polymerase II regulatory region sequence-specific DNA binding  fibrillar center  protein binding  nucleus  nucleoplasm  cytoplasm  centrosome  cytosol  cell cortex  transcription, DNA-templated  cell cycle  positive regulation of cell proliferation  regulation of gene expression  positive regulation of gene expression  negative regulation of gene expression  positive regulation of peptidyl-threonine phosphorylation  regulation of mitochondrion organization  positive regulation of G2/M transition of mitotic cell cycle  positive regulation of peptidyl-serine phosphorylation  inner ear development  positive regulation of epithelial cell proliferation  cell division  regulation of mitochondrial membrane potential  positive regulation of protein kinase B signaling  regulation of transcription from RNA polymerase II promoter in response to hypoxia  cellular response to nitrosative stress  regulation of mitochondrial DNA metabolic process  regulation of response to oxidative stress  positive regulation of cyclin-dependent protein kinase activity  positive regulation of otic vesicle morphogenesis  
Ontology : EGO-EBIRNA polymerase II regulatory region sequence-specific DNA binding  fibrillar center  protein binding  nucleus  nucleoplasm  cytoplasm  centrosome  cytosol  cell cortex  transcription, DNA-templated  cell cycle  positive regulation of cell proliferation  regulation of gene expression  positive regulation of gene expression  negative regulation of gene expression  positive regulation of peptidyl-threonine phosphorylation  regulation of mitochondrion organization  positive regulation of G2/M transition of mitotic cell cycle  positive regulation of peptidyl-serine phosphorylation  inner ear development  positive regulation of epithelial cell proliferation  cell division  regulation of mitochondrial membrane potential  positive regulation of protein kinase B signaling  regulation of transcription from RNA polymerase II promoter in response to hypoxia  cellular response to nitrosative stress  regulation of mitochondrial DNA metabolic process  regulation of response to oxidative stress  positive regulation of cyclin-dependent protein kinase activity  positive regulation of otic vesicle morphogenesis  
NDEx NetworkSTOX1
Atlas of Cancer Signalling NetworkSTOX1
Wikipedia pathwaysSTOX1
Orthology - Evolution
OrthoDB219736
GeneTree (enSembl)ENSG00000165730
Phylogenetic Trees/Animal Genes : TreeFamSTOX1
HOVERGENQ6ZVD7
HOGENOMQ6ZVD7
Homologs : HomoloGeneSTOX1
Homology/Alignments : Family Browser (UCSC)STOX1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTOX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STOX1
dbVarSTOX1
ClinVarSTOX1
1000_GenomesSTOX1 
Exome Variant ServerSTOX1
ExAC (Exome Aggregation Consortium)STOX1 (select the gene name)
Genetic variants : HAPMAP219736
Genomic Variants (DGV)STOX1 [DGVbeta]
DECIPHERSTOX1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTOX1 
Mutations
ICGC Data PortalSTOX1 
TCGA Data PortalSTOX1 
Broad Tumor PortalSTOX1
OASIS PortalSTOX1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTOX1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTOX1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STOX1
DgiDB (Drug Gene Interaction Database)STOX1
DoCM (Curated mutations)STOX1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STOX1 (select a term)
intoGenSTOX1
Cancer3DSTOX1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609397    609404   
Orphanet20319   
MedgenSTOX1
Genetic Testing Registry STOX1
NextProtQ6ZVD7 [Medical]
TSGene219736
GENETestsSTOX1
Target ValidationSTOX1
Huge Navigator STOX1 [HugePedia]
snp3D : Map Gene to Disease219736
BioCentury BCIQSTOX1
ClinGenSTOX1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219736
Chemical/Pharm GKB GenePA134883643
Clinical trialSTOX1
Miscellaneous
canSAR (ICR)STOX1 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTOX1
EVEXSTOX1
GoPubMedSTOX1
iHOPSTOX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:57:58 CEST 2017

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