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STOX2 (storkhead box 2)

Identity

Alias_symbol (synonym)DKFZp762K222
Other alias-
HGNC (Hugo) STOX2
LocusID (NCBI) 56977
Atlas_Id 40326
Location 4q35.1  [Link to chromosome band 4q35]
Location_base_pair Starts at 183905356 and ends at 184023530 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LAMB3 (1q32.2) / STOX2 (4q35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STOX2   25450
Cards
Entrez_Gene (NCBI)STOX2  56977  storkhead box 2
Aliases
GeneCards (Weizmann)STOX2
Ensembl hg19 (Hinxton)ENSG00000173320 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173320 [Gene_View]  chr4:183905356-184023530 [Contig_View]  STOX2 [Vega]
ICGC DataPortalENSG00000173320
TCGA cBioPortalSTOX2
AceView (NCBI)STOX2
Genatlas (Paris)STOX2
WikiGenes56977
SOURCE (Princeton)STOX2
Genetics Home Reference (NIH)STOX2
Genomic and cartography
GoldenPath hg38 (UCSC)STOX2  -     chr4:183905356-184023530 +  4q35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STOX2  -     4q35.1   [Description]    (hg19-Feb_2009)
EnsemblSTOX2 - 4q35.1 [CytoView hg19]  STOX2 - 4q35.1 [CytoView hg38]
Mapping of homologs : NCBISTOX2 [Mapview hg19]  STOX2 [Mapview hg38]
OMIM617359   
Gene and transcription
Genbank (Entrez)AB037813 AK001394 AK096619 AK289840 AL390216
RefSeq transcript (Entrez)NM_020225
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STOX2
Cluster EST : UnigeneHs.696657 [ NCBI ]
CGAP (NCI)Hs.696657
Alternative Splicing GalleryENSG00000173320
Gene ExpressionSTOX2 [ NCBI-GEO ]   STOX2 [ EBI - ARRAY_EXPRESS ]   STOX2 [ SEEK ]   STOX2 [ MEM ]
Gene Expression Viewer (FireBrowse)STOX2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56977
GTEX Portal (Tissue expression)STOX2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2F5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2F5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2F5
Splice isoforms : SwissVarQ9P2F5
PhosPhoSitePlusQ9P2F5
Domains : Interpro (EBI)Storkhead-box_winged-helix   
Domain families : Pfam (Sanger)Stork_head (PF10264)   
Domain families : Pfam (NCBI)pfam10264   
Conserved Domain (NCBI)STOX2
DMDM Disease mutations56977
Blocks (Seattle)STOX2
SuperfamilyQ9P2F5
Human Protein AtlasENSG00000173320
Peptide AtlasQ9P2F5
HPRD16823
IPIIPI00002157   IPI00878666   IPI00964153   IPI00966023   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2F5
IntAct (EBI)Q9P2F5
FunCoupENSG00000173320
BioGRIDSTOX2
STRING (EMBL)STOX2
ZODIACSTOX2
Ontologies - Pathways
QuickGOQ9P2F5
Ontology : AmiGOmaternal placenta development  molecular_function  cellular_component  embryo development  
Ontology : EGO-EBImaternal placenta development  molecular_function  cellular_component  embryo development  
NDEx NetworkSTOX2
Atlas of Cancer Signalling NetworkSTOX2
Wikipedia pathwaysSTOX2
Orthology - Evolution
OrthoDB56977
GeneTree (enSembl)ENSG00000173320
Phylogenetic Trees/Animal Genes : TreeFamSTOX2
HOVERGENQ9P2F5
HOGENOMQ9P2F5
Homologs : HomoloGeneSTOX2
Homology/Alignments : Family Browser (UCSC)STOX2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTOX2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STOX2
dbVarSTOX2
ClinVarSTOX2
1000_GenomesSTOX2 
Exome Variant ServerSTOX2
ExAC (Exome Aggregation Consortium)STOX2 (select the gene name)
Genetic variants : HAPMAP56977
Genomic Variants (DGV)STOX2 [DGVbeta]
DECIPHERSTOX2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTOX2 
Mutations
ICGC Data PortalSTOX2 
TCGA Data PortalSTOX2 
Broad Tumor PortalSTOX2
OASIS PortalSTOX2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTOX2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTOX2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STOX2
DgiDB (Drug Gene Interaction Database)STOX2
DoCM (Curated mutations)STOX2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STOX2 (select a term)
intoGenSTOX2
Cancer3DSTOX2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617359   
Orphanet
MedgenSTOX2
Genetic Testing Registry STOX2
NextProtQ9P2F5 [Medical]
TSGene56977
GENETestsSTOX2
Target ValidationSTOX2
Huge Navigator STOX2 [HugePedia]
snp3D : Map Gene to Disease56977
BioCentury BCIQSTOX2
ClinGenSTOX2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56977
Chemical/Pharm GKB GenePA142670861
Clinical trialSTOX2
Miscellaneous
canSAR (ICR)STOX2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTOX2
EVEXSTOX2
GoPubMedSTOX2
iHOPSTOX2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:57:58 CEST 2017

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