Atlas of Genetics and Cytogenetics in Oncology and Haematology


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STPG1 (sperm tail PG-rich repeat containing 1)

Identity

Alias (NCBI)C1orf201
MAPO2
HGNC (Hugo) STPG1
HGNC Alias symbFLJ33340
MAPO2
HGNC Alias nameO6-methylguanine-induced apoptosis 2
HGNC Previous nameC1orf201
HGNC Previous namechromosome 1 open reading frame 201
LocusID (NCBI) 90529
Atlas_Id 74322
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 24356999 and ends at 24413772 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
IFI6 (1p36.11) / STPG1 (1p36.11)IFNLR1 (1p36.11) / STPG1 (1p36.11)USP48 (1p36.12) / STPG1 (1p36.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  IFI6/STPG1 (1p36)
USP48/STPG1 (1p36)


External links

Nomenclature
HGNC (Hugo)STPG1   28070
Cards
Entrez_Gene (NCBI)STPG1  90529  sperm tail PG-rich repeat containing 1
AliasesC1orf201; MAPO2
GeneCards (Weizmann)STPG1
Ensembl hg19 (Hinxton)ENSG00000001460 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000001460 [Gene_View]  ENSG00000001460 [Sequence]  chr1:24356999-24413772 [Contig_View]  STPG1 [Vega]
ICGC DataPortalENSG00000001460
TCGA cBioPortalSTPG1
AceView (NCBI)STPG1
Genatlas (Paris)STPG1
WikiGenes90529
SOURCE (Princeton)STPG1
Genetics Home Reference (NIH)STPG1
Genomic and cartography
GoldenPath hg38 (UCSC)STPG1  -     chr1:24356999-24413772 -  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STPG1  -     1p36.11   [Description]    (hg19-Feb_2009)
GoldenPathSTPG1 - 1p36.11 [CytoView hg19]  STPG1 - 1p36.11 [CytoView hg38]
ImmunoBaseENSG00000001460
genome Data Viewer NCBISTPG1 [Mapview hg19]  
OMIM615826   
Gene and transcription
Genbank (Entrez)AK025957 AK299401 BC017650 BC034315 BC035061
RefSeq transcript (Entrez)NM_001199012 NM_001199013 NM_001199014 NM_178122
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STPG1
Alternative Splicing GalleryENSG00000001460
Gene ExpressionSTPG1 [ NCBI-GEO ]   STPG1 [ EBI - ARRAY_EXPRESS ]   STPG1 [ SEEK ]   STPG1 [ MEM ]
Gene Expression Viewer (FireBrowse)STPG1 [ Firebrowse - Broad ]
GenevisibleExpression of STPG1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90529
GTEX Portal (Tissue expression)STPG1
Human Protein AtlasENSG00000001460-STPG1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TH74   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TH74  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TH74
Splice isoforms : SwissVarQ5TH74
PhosPhoSitePlusQ5TH74
Domains : Interpro (EBI)SHIPPO-rpt   
Domain families : Pfam (Sanger)SHIPPO-rpt (PF07004)   
Domain families : Pfam (NCBI)pfam07004   
Conserved Domain (NCBI)STPG1
DMDM Disease mutations90529
Blocks (Seattle)STPG1
SuperfamilyQ5TH74
Human Protein Atlas [tissue]ENSG00000001460-STPG1 [tissue]
Peptide AtlasQ5TH74
HPRD14273
IPIIPI00642810   IPI00867604   IPI00647342   IPI00909403   IPI00646670   IPI00161527   IPI00514148   
Protein Interaction databases
DIP (DOE-UCLA)Q5TH74
IntAct (EBI)Q5TH74
FunCoupENSG00000001460
BioGRIDSTPG1
STRING (EMBL)STPG1
ZODIACSTPG1
Ontologies - Pathways
QuickGOQ5TH74
Ontology : AmiGOmolecular_function  nucleus  mitochondrion  positive regulation of apoptotic process  positive regulation of protein homodimerization activity  positive regulation of mitochondrial membrane permeability involved in apoptotic process  
Ontology : EGO-EBImolecular_function  nucleus  mitochondrion  positive regulation of apoptotic process  positive regulation of protein homodimerization activity  positive regulation of mitochondrial membrane permeability involved in apoptotic process  
NDEx NetworkSTPG1
Atlas of Cancer Signalling NetworkSTPG1
Wikipedia pathwaysSTPG1
Orthology - Evolution
OrthoDB90529
GeneTree (enSembl)ENSG00000001460
Phylogenetic Trees/Animal Genes : TreeFamSTPG1
HOGENOMQ5TH74
Homologs : HomoloGeneSTPG1
Homology/Alignments : Family Browser (UCSC)STPG1
Gene fusions - Rearrangements
Fusion : QuiverSTPG1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTPG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STPG1
dbVarSTPG1
ClinVarSTPG1
1000_GenomesSTPG1 
Exome Variant ServerSTPG1
GNOMAD BrowserENSG00000001460
Varsome BrowserSTPG1
Genetic variants : HAPMAP90529
Genomic Variants (DGV)STPG1 [DGVbeta]
DECIPHERSTPG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTPG1 
Mutations
ICGC Data PortalSTPG1 
TCGA Data PortalSTPG1 
Broad Tumor PortalSTPG1
OASIS PortalSTPG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTPG1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSTPG1
Mutations and Diseases : HGMDSTPG1
BioMutasearch STPG1
DgiDB (Drug Gene Interaction Database)STPG1
DoCM (Curated mutations)STPG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STPG1 (select a term)
intoGenSTPG1
Cancer3DSTPG1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615826   
Orphanet
DisGeNETSTPG1
MedgenSTPG1
Genetic Testing Registry STPG1
NextProtQ5TH74 [Medical]
TSGene90529
GENETestsSTPG1
Target ValidationSTPG1
Huge Navigator STPG1 [HugePedia]
snp3D : Map Gene to Disease90529
BioCentury BCIQSTPG1
ClinGenSTPG1
Clinical trials, drugs, therapy
Protein Interactions : CTD90529
Pharm GKB GenePA143485320
Clinical trialSTPG1
Miscellaneous
canSAR (ICR)STPG1 (select the gene name)
HarmonizomeSTPG1
DataMed IndexSTPG1
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTPG1
EVEXSTPG1
GoPubMedSTPG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jul 16 16:31:33 CEST 2020

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