Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

STPG1 (sperm-tail PG-rich repeat containing 1)

Identity

Alias_namesC1orf201
chromosome 1 open reading frame 201
Alias_symbol (synonym)FLJ33340
MAPO2
Other alias
HGNC (Hugo) STPG1
LocusID (NCBI) 90529
Atlas_Id 74322
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 24683489 and ends at 24741587 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
IFI6 (1p36.11) / STPG1 (1p36.11)IFNLR1 (1p36.11) / STPG1 (1p36.11)USP48 (1p36.12) / STPG1 (1p36.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STPG1   28070
Cards
Entrez_Gene (NCBI)STPG1  90529  sperm-tail PG-rich repeat containing 1
AliasesC1orf201; MAPO2
GeneCards (Weizmann)STPG1
Ensembl hg19 (Hinxton)ENSG00000001460 [Gene_View]  chr1:24683489-24741587 [Contig_View]  STPG1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000001460 [Gene_View]  chr1:24683489-24741587 [Contig_View]  STPG1 [Vega]
ICGC DataPortalENSG00000001460
TCGA cBioPortalSTPG1
AceView (NCBI)STPG1
Genatlas (Paris)STPG1
WikiGenes90529
SOURCE (Princeton)STPG1
Genetics Home Reference (NIH)STPG1
Genomic and cartography
GoldenPath hg19 (UCSC)STPG1  -     chr1:24683489-24741587 -  1p36.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)STPG1  -     1p36.11   [Description]    (hg38-Dec_2013)
EnsemblSTPG1 - 1p36.11 [CytoView hg19]  STPG1 - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBISTPG1 [Mapview hg19]  STPG1 [Mapview hg38]
OMIM615826   
Gene and transcription
Genbank (Entrez)AK025957 AK299401 BC017650 BC034315 BC035061
RefSeq transcript (Entrez)NM_001199012 NM_001199013 NM_001199014 NM_178122
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929289
Consensus coding sequences : CCDS (NCBI)STPG1
Cluster EST : UnigeneHs.403187 [ NCBI ]
CGAP (NCI)Hs.403187
Alternative Splicing GalleryENSG00000001460
Gene ExpressionSTPG1 [ NCBI-GEO ]   STPG1 [ EBI - ARRAY_EXPRESS ]   STPG1 [ SEEK ]   STPG1 [ MEM ]
Gene Expression Viewer (FireBrowse)STPG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90529
GTEX Portal (Tissue expression)STPG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TH74   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TH74  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TH74
Splice isoforms : SwissVarQ5TH74
PhosPhoSitePlusQ5TH74
Domains : Interpro (EBI)SHIPPO-rpt   
Domain families : Pfam (Sanger)SHIPPO-rpt (PF07004)   
Domain families : Pfam (NCBI)pfam07004   
Conserved Domain (NCBI)STPG1
DMDM Disease mutations90529
Blocks (Seattle)STPG1
SuperfamilyQ5TH74
Human Protein AtlasENSG00000001460
Peptide AtlasQ5TH74
HPRD14273
IPIIPI00642810   IPI00867604   IPI00647342   IPI00909403   IPI00646670   IPI00161527   IPI00514148   
Protein Interaction databases
DIP (DOE-UCLA)Q5TH74
IntAct (EBI)Q5TH74
FunCoupENSG00000001460
BioGRIDSTPG1
STRING (EMBL)STPG1
ZODIACSTPG1
Ontologies - Pathways
QuickGOQ5TH74
Ontology : AmiGOnucleus  cytoplasm  apoptotic process  
Ontology : EGO-EBInucleus  cytoplasm  apoptotic process  
NDEx NetworkSTPG1
Atlas of Cancer Signalling NetworkSTPG1
Wikipedia pathwaysSTPG1
Orthology - Evolution
OrthoDB90529
GeneTree (enSembl)ENSG00000001460
Phylogenetic Trees/Animal Genes : TreeFamSTPG1
HOVERGENQ5TH74
HOGENOMQ5TH74
Homologs : HomoloGeneSTPG1
Homology/Alignments : Family Browser (UCSC)STPG1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTPG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STPG1
dbVarSTPG1
ClinVarSTPG1
1000_GenomesSTPG1 
Exome Variant ServerSTPG1
ExAC (Exome Aggregation Consortium)STPG1 (select the gene name)
Genetic variants : HAPMAP90529
Genomic Variants (DGV)STPG1 [DGVbeta]
DECIPHER (Syndromes)1:24683489-24741587  ENSG00000001460
CONAN: Copy Number AnalysisSTPG1 
Mutations
ICGC Data PortalSTPG1 
TCGA Data PortalSTPG1 
Broad Tumor PortalSTPG1
OASIS PortalSTPG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTPG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTPG1
BioMutasearch STPG1
DgiDB (Drug Gene Interaction Database)STPG1
DoCM (Curated mutations)STPG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STPG1 (select a term)
intoGenSTPG1
Cancer3DSTPG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615826   
Orphanet
MedgenSTPG1
Genetic Testing Registry STPG1
NextProtQ5TH74 [Medical]
TSGene90529
GENETestsSTPG1
Huge Navigator STPG1 [HugePedia]
snp3D : Map Gene to Disease90529
BioCentury BCIQSTPG1
ClinGenSTPG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90529
Chemical/Pharm GKB GenePA143485320
Clinical trialSTPG1
Miscellaneous
canSAR (ICR)STPG1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTPG1
EVEXSTPG1
GoPubMedSTPG1
iHOPSTPG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:46:58 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.