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STPG2 (sperm tail PG-rich repeat containing 2)

Identity

Alias_namesC4orf37
chromosome 4 open reading frame 37
Alias_symbol (synonym)MGC46496
Other alias
HGNC (Hugo) STPG2
LocusID (NCBI) 285555
Atlas_Id 74323
Location 4q22.3  [Link to chromosome band 4q22]
Location_base_pair Starts at 97558874 and ends at 98143240 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NAA15 (4q31.1) / STPG2 (4q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STPG2   28712
Cards
Entrez_Gene (NCBI)STPG2  285555  sperm tail PG-rich repeat containing 2
AliasesC4orf37
GeneCards (Weizmann)STPG2
Ensembl hg19 (Hinxton)ENSG00000163116 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163116 [Gene_View]  chr4:97558874-98143240 [Contig_View]  STPG2 [Vega]
ICGC DataPortalENSG00000163116
TCGA cBioPortalSTPG2
AceView (NCBI)STPG2
Genatlas (Paris)STPG2
WikiGenes285555
SOURCE (Princeton)STPG2
Genetics Home Reference (NIH)STPG2
Genomic and cartography
GoldenPath hg38 (UCSC)STPG2  -     chr4:97558874-98143240 -  4q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STPG2  -     4q22.3   [Description]    (hg19-Feb_2009)
EnsemblSTPG2 - 4q22.3 [CytoView hg19]  STPG2 - 4q22.3 [CytoView hg38]
Mapping of homologs : NCBISTPG2 [Mapview hg19]  STPG2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC036870 BX648305 HQ448539
RefSeq transcript (Entrez)NM_174952
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STPG2
Cluster EST : UnigeneHs.680226 [ NCBI ]
CGAP (NCI)Hs.680226
Alternative Splicing GalleryENSG00000163116
Gene ExpressionSTPG2 [ NCBI-GEO ]   STPG2 [ EBI - ARRAY_EXPRESS ]   STPG2 [ SEEK ]   STPG2 [ MEM ]
Gene Expression Viewer (FireBrowse)STPG2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285555
GTEX Portal (Tissue expression)STPG2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N412   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N412  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N412
Splice isoforms : SwissVarQ8N412
PhosPhoSitePlusQ8N412
Domains : Interpro (EBI)SHIPPO-rpt   
Domain families : Pfam (Sanger)SHIPPO-rpt (PF07004)   
Domain families : Pfam (NCBI)pfam07004   
Conserved Domain (NCBI)STPG2
DMDM Disease mutations285555
Blocks (Seattle)STPG2
SuperfamilyQ8N412
Human Protein AtlasENSG00000163116
Peptide AtlasQ8N412
HPRD14650
IPIIPI00166598   IPI00983763   
Protein Interaction databases
DIP (DOE-UCLA)Q8N412
IntAct (EBI)Q8N412
FunCoupENSG00000163116
BioGRIDSTPG2
STRING (EMBL)STPG2
ZODIACSTPG2
Ontologies - Pathways
QuickGOQ8N412
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSTPG2
Atlas of Cancer Signalling NetworkSTPG2
Wikipedia pathwaysSTPG2
Orthology - Evolution
OrthoDB285555
GeneTree (enSembl)ENSG00000163116
Phylogenetic Trees/Animal Genes : TreeFamSTPG2
HOVERGENQ8N412
HOGENOMQ8N412
Homologs : HomoloGeneSTPG2
Homology/Alignments : Family Browser (UCSC)STPG2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTPG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STPG2
dbVarSTPG2
ClinVarSTPG2
1000_GenomesSTPG2 
Exome Variant ServerSTPG2
ExAC (Exome Aggregation Consortium)STPG2 (select the gene name)
Genetic variants : HAPMAP285555
Genomic Variants (DGV)STPG2 [DGVbeta]
DECIPHERSTPG2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTPG2 
Mutations
ICGC Data PortalSTPG2 
TCGA Data PortalSTPG2 
Broad Tumor PortalSTPG2
OASIS PortalSTPG2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSTPG2
BioMutasearch STPG2
DgiDB (Drug Gene Interaction Database)STPG2
DoCM (Curated mutations)STPG2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STPG2 (select a term)
intoGenSTPG2
Cancer3DSTPG2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSTPG2
Genetic Testing Registry STPG2
NextProtQ8N412 [Medical]
TSGene285555
GENETestsSTPG2
Target ValidationSTPG2
Huge Navigator STPG2 [HugePedia]
snp3D : Map Gene to Disease285555
BioCentury BCIQSTPG2
ClinGenSTPG2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285555
Chemical/Pharm GKB GenePA162379799
Clinical trialSTPG2
Miscellaneous
canSAR (ICR)STPG2 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTPG2
EVEXSTPG2
GoPubMedSTPG2
iHOPSTPG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:44:26 CEST 2017

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