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STPG3 (sperm-tail PG-rich repeat containing 3)

Identity

Other aliasC9orf173
HGNC (Hugo) STPG3
LocusID (NCBI) 441476
Atlas_Id 78696
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 137251261 and ends at 137253483 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STPG3   37285
Cards
Entrez_Gene (NCBI)STPG3  441476  sperm-tail PG-rich repeat containing 3
AliasesC9orf173
GeneCards (Weizmann)STPG3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:137251261-137253483 [Contig_View]  STPG3 [Vega]
TCGA cBioPortalSTPG3
AceView (NCBI)STPG3
Genatlas (Paris)STPG3
WikiGenes441476
SOURCE (Princeton)STPG3
Genetics Home Reference (NIH)STPG3
Genomic and cartography
GoldenPath hg38 (UCSC)STPG3  -     chr9:137251261-137253483 +  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STPG3  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblSTPG3 - 9q34.3 [CytoView hg19]  STPG3 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBISTPG3 [Mapview hg19]  STPG3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097565 BC033939 BC050094 BC132726 BC144308
RefSeq transcript (Entrez)NM_001004353 NM_001256699 NM_001256700 NM_001256701
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STPG3
Cluster EST : UnigeneHs.372640 [ NCBI ]
CGAP (NCI)Hs.372640
Gene ExpressionSTPG3 [ NCBI-GEO ]   STPG3 [ EBI - ARRAY_EXPRESS ]   STPG3 [ SEEK ]   STPG3 [ MEM ]
Gene Expression Viewer (FireBrowse)STPG3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441476
GTEX Portal (Tissue expression)STPG3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7X2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7X2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7X2
Splice isoforms : SwissVarQ8N7X2
PhosPhoSitePlusQ8N7X2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)STPG3
DMDM Disease mutations441476
Blocks (Seattle)STPG3
SuperfamilyQ8N7X2
Peptide AtlasQ8N7X2
HPRD17408
IPIIPI00384682   IPI00887719   IPI00386129   IPI00940364   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7X2
IntAct (EBI)Q8N7X2
BioGRIDSTPG3
STRING (EMBL)STPG3
ZODIACSTPG3
Ontologies - Pathways
QuickGOQ8N7X2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSTPG3
Atlas of Cancer Signalling NetworkSTPG3
Wikipedia pathwaysSTPG3
Orthology - Evolution
OrthoDB441476
Phylogenetic Trees/Animal Genes : TreeFamSTPG3
HOVERGENQ8N7X2
HOGENOMQ8N7X2
Homologs : HomoloGeneSTPG3
Homology/Alignments : Family Browser (UCSC)STPG3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTPG3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STPG3
dbVarSTPG3
ClinVarSTPG3
1000_GenomesSTPG3 
Exome Variant ServerSTPG3
ExAC (Exome Aggregation Consortium)STPG3 (select the gene name)
Genetic variants : HAPMAP441476
Genomic Variants (DGV)STPG3 [DGVbeta]
DECIPHERSTPG3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTPG3 
Mutations
ICGC Data PortalSTPG3 
TCGA Data PortalSTPG3 
Broad Tumor PortalSTPG3
OASIS PortalSTPG3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSTPG3
BioMutasearch STPG3
DgiDB (Drug Gene Interaction Database)STPG3
DoCM (Curated mutations)STPG3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STPG3 (select a term)
intoGenSTPG3
Cancer3DSTPG3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSTPG3
Genetic Testing Registry STPG3
NextProtQ8N7X2 [Medical]
TSGene441476
GENETestsSTPG3
Target ValidationSTPG3
Huge Navigator STPG3 [HugePedia]
snp3D : Map Gene to Disease441476
BioCentury BCIQSTPG3
ClinGenSTPG3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441476
Chemical/Pharm GKB GenePA165585550
Clinical trialSTPG3
Miscellaneous
canSAR (ICR)STPG3 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTPG3
EVEXSTPG3
GoPubMedSTPG3
iHOPSTPG3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:44:26 CEST 2017

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