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STPG4 (sperm-tail PG-rich repeat containing 4)

Identity

Alias_namesC2orf61
chromosome 2 open reading frame 61
Alias_symbol (synonym)FLJ40172
Other aliasGSE
HGNC (Hugo) STPG4
LocusID (NCBI) 285051
Atlas_Id 79897
Location 2p21  [Link to chromosome band 2p21]
Location_base_pair Starts at 47086991 and ends at 47155378 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STPG4   26850
Cards
Entrez_Gene (NCBI)STPG4  285051  sperm-tail PG-rich repeat containing 4
AliasesC2orf61; GSE
GeneCards (Weizmann)STPG4
Ensembl hg19 (Hinxton)ENSG00000239605 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000239605 [Gene_View]  chr2:47086991-47155378 [Contig_View]  STPG4 [Vega]
ICGC DataPortalENSG00000239605
TCGA cBioPortalSTPG4
AceView (NCBI)STPG4
Genatlas (Paris)STPG4
WikiGenes285051
SOURCE (Princeton)STPG4
Genetics Home Reference (NIH)STPG4
Genomic and cartography
GoldenPath hg38 (UCSC)STPG4  -     chr2:47086991-47155378 -  2p21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STPG4  -     2p21   [Description]    (hg19-Feb_2009)
EnsemblSTPG4 - 2p21 [CytoView hg19]  STPG4 - 2p21 [CytoView hg38]
Mapping of homologs : NCBISTPG4 [Mapview hg19]  STPG4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097491 BC172329 DA313162
RefSeq transcript (Entrez)NM_001163561 NM_173649
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STPG4
Cluster EST : UnigeneHs.531575 [ NCBI ]
CGAP (NCI)Hs.531575
Alternative Splicing GalleryENSG00000239605
Gene ExpressionSTPG4 [ NCBI-GEO ]   STPG4 [ EBI - ARRAY_EXPRESS ]   STPG4 [ SEEK ]   STPG4 [ MEM ]
Gene Expression Viewer (FireBrowse)STPG4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285051
GTEX Portal (Tissue expression)STPG4
Human Protein AtlasENSG00000239605-STPG4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N801   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N801  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N801
Splice isoforms : SwissVarQ8N801
PhosPhoSitePlusQ8N801
Domains : Interpro (EBI)SHIPPO-rpt   
Domain families : Pfam (Sanger)SHIPPO-rpt (PF07004)   
Domain families : Pfam (NCBI)pfam07004   
Conserved Domain (NCBI)STPG4
DMDM Disease mutations285051
Blocks (Seattle)STPG4
SuperfamilyQ8N801
Human Protein Atlas [tissue]ENSG00000239605-STPG4 [tissue]
Peptide AtlasQ8N801
IPIIPI00167261   IPI00916953   
Protein Interaction databases
DIP (DOE-UCLA)Q8N801
IntAct (EBI)Q8N801
FunCoupENSG00000239605
BioGRIDSTPG4
STRING (EMBL)STPG4
ZODIACSTPG4
Ontologies - Pathways
QuickGOQ8N801
Ontology : AmiGOfemale pronucleus  male pronucleus  chromatin binding  nucleus  cytoplasm  covalent chromatin modification  germinal vesicle  DNA demethylation of male pronucleus  positive regulation of DNA demethylation  
Ontology : EGO-EBIfemale pronucleus  male pronucleus  chromatin binding  nucleus  cytoplasm  covalent chromatin modification  germinal vesicle  DNA demethylation of male pronucleus  positive regulation of DNA demethylation  
NDEx NetworkSTPG4
Atlas of Cancer Signalling NetworkSTPG4
Wikipedia pathwaysSTPG4
Orthology - Evolution
OrthoDB285051
GeneTree (enSembl)ENSG00000239605
Phylogenetic Trees/Animal Genes : TreeFamSTPG4
HOVERGENQ8N801
HOGENOMQ8N801
Homologs : HomoloGeneSTPG4
Homology/Alignments : Family Browser (UCSC)STPG4
Gene fusions - Rearrangements
Tumor Fusion PortalSTPG4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTPG4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STPG4
dbVarSTPG4
ClinVarSTPG4
1000_GenomesSTPG4 
Exome Variant ServerSTPG4
ExAC (Exome Aggregation Consortium)ENSG00000239605
GNOMAD BrowserENSG00000239605
Genetic variants : HAPMAP285051
Genomic Variants (DGV)STPG4 [DGVbeta]
DECIPHERSTPG4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTPG4 
Mutations
ICGC Data PortalSTPG4 
TCGA Data PortalSTPG4 
Broad Tumor PortalSTPG4
OASIS PortalSTPG4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSTPG4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STPG4
DgiDB (Drug Gene Interaction Database)STPG4
DoCM (Curated mutations)STPG4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STPG4 (select a term)
intoGenSTPG4
Cancer3DSTPG4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSTPG4
MedgenSTPG4
Genetic Testing Registry STPG4
NextProtQ8N801 [Medical]
TSGene285051
GENETestsSTPG4
Target ValidationSTPG4
Huge Navigator STPG4 [HugePedia]
snp3D : Map Gene to Disease285051
BioCentury BCIQSTPG4
ClinGenSTPG4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285051
Chemical/Pharm GKB GenePA162379319
Clinical trialSTPG4
Miscellaneous
canSAR (ICR)STPG4 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTPG4
EVEXSTPG4
GoPubMedSTPG4
iHOPSTPG4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:16:51 CET 2017

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