Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

STRA6 (stimulated by retinoic acid 6)

Identity

Alias_namesstimulated by retinoic acid gene 6 homolog (mouse)
stimulated by retinoic acid 6 homolog (mouse)
Alias_symbol (synonym)FLJ12541
Other aliasMCOPCB8
MCOPS9
PP14296
HGNC (Hugo) STRA6
LocusID (NCBI) 64220
Atlas_Id 55034
Location 15q24.1  [Link to chromosome band 15q24]
Location_base_pair Starts at 74179466 and ends at 74209030 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ETFA (15q24.2) / STRA6 (15q24.1)LOC100507412 (-) / STRA6 (15q24.1)ETFA 15q24.2 / STRA6 15q24.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STRA6   30650
Cards
Entrez_Gene (NCBI)STRA6  64220  stimulated by retinoic acid 6
AliasesMCOPCB8; MCOPS9; PP14296
GeneCards (Weizmann)STRA6
Ensembl hg19 (Hinxton)ENSG00000137868 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137868 [Gene_View]  chr15:74179466-74209030 [Contig_View]  STRA6 [Vega]
ICGC DataPortalENSG00000137868
TCGA cBioPortalSTRA6
AceView (NCBI)STRA6
Genatlas (Paris)STRA6
WikiGenes64220
SOURCE (Princeton)STRA6
Genetics Home Reference (NIH)STRA6
Genomic and cartography
GoldenPath hg38 (UCSC)STRA6  -     chr15:74179466-74209030 -  15q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STRA6  -     15q24.1   [Description]    (hg19-Feb_2009)
EnsemblSTRA6 - 15q24.1 [CytoView hg19]  STRA6 - 15q24.1 [CytoView hg38]
Mapping of homologs : NCBISTRA6 [Mapview hg19]  STRA6 [Mapview hg38]
OMIM601186   610745   
Gene and transcription
Genbank (Entrez)AF352728 AF352729 AF370419 AK022603 AK056125
RefSeq transcript (Entrez)NM_001142617 NM_001142618 NM_001142619 NM_001142620 NM_001199040 NM_001199041 NM_001199042 NM_022369
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STRA6
Cluster EST : UnigeneHs.24553 [ NCBI ]
CGAP (NCI)Hs.24553
Alternative Splicing GalleryENSG00000137868
Gene ExpressionSTRA6 [ NCBI-GEO ]   STRA6 [ EBI - ARRAY_EXPRESS ]   STRA6 [ SEEK ]   STRA6 [ MEM ]
Gene Expression Viewer (FireBrowse)STRA6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64220
GTEX Portal (Tissue expression)STRA6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BX79   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BX79  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BX79
Splice isoforms : SwissVarQ9BX79
PhosPhoSitePlusQ9BX79
Domains : Interpro (EBI)STRA6   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)STRA6
DMDM Disease mutations64220
Blocks (Seattle)STRA6
SuperfamilyQ9BX79
Human Protein AtlasENSG00000137868
Peptide AtlasQ9BX79
HPRD18122
IPIIPI00465247   IPI00448987   IPI00877097   IPI00877087   IPI01009578   IPI00981555   IPI01009212   IPI01011474   IPI00983430   
Protein Interaction databases
DIP (DOE-UCLA)Q9BX79
IntAct (EBI)Q9BX79
FunCoupENSG00000137868
BioGRIDSTRA6
STRING (EMBL)STRA6
ZODIACSTRA6
Ontologies - Pathways
QuickGOQ9BX79
Ontology : AmiGOretinoid metabolic process  blood vessel development  kidney development  pulmonary valve morphogenesis  ventricular septum development  receptor activity  plasma membrane  heart development  learning  feeding behavior  integral component of membrane  lung development  adrenal gland development  female genitalia development  vocal learning  protein complex  ear development  nose morphogenesis  lung alveolus development  positive regulation of behavior  digestive tract morphogenesis  embryonic digestive tract development  developmental growth  smooth muscle tissue development  artery morphogenesis  cognition  neuromuscular process  vitamin transport  vitamin transporter activity  head development  head morphogenesis  face morphogenesis  lung vasculature development  diaphragm development  embryonic camera-type eye formation  eyelid development in camera-type eye  uterus morphogenesis  alveolar primary septum development  pulmonary artery morphogenesis  paramesonephric duct development  ductus arteriosus closure  
Ontology : EGO-EBIretinoid metabolic process  blood vessel development  kidney development  pulmonary valve morphogenesis  ventricular septum development  receptor activity  plasma membrane  heart development  learning  feeding behavior  integral component of membrane  lung development  adrenal gland development  female genitalia development  vocal learning  protein complex  ear development  nose morphogenesis  lung alveolus development  positive regulation of behavior  digestive tract morphogenesis  embryonic digestive tract development  developmental growth  smooth muscle tissue development  artery morphogenesis  cognition  neuromuscular process  vitamin transport  vitamin transporter activity  head development  head morphogenesis  face morphogenesis  lung vasculature development  diaphragm development  embryonic camera-type eye formation  eyelid development in camera-type eye  uterus morphogenesis  alveolar primary septum development  pulmonary artery morphogenesis  paramesonephric duct development  ductus arteriosus closure  
NDEx NetworkSTRA6
Atlas of Cancer Signalling NetworkSTRA6
Wikipedia pathwaysSTRA6
Orthology - Evolution
OrthoDB64220
GeneTree (enSembl)ENSG00000137868
Phylogenetic Trees/Animal Genes : TreeFamSTRA6
HOVERGENQ9BX79
HOGENOMQ9BX79
Homologs : HomoloGeneSTRA6
Homology/Alignments : Family Browser (UCSC)STRA6
Gene fusions - Rearrangements
Fusion : MitelmanETFA/STRA6 [15q24.2/15q24.1]  [t(15;15)(q24;q24)]  
Fusion: TCGAETFA 15q24.2 STRA6 15q24.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTRA6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STRA6
dbVarSTRA6
ClinVarSTRA6
1000_GenomesSTRA6 
Exome Variant ServerSTRA6
ExAC (Exome Aggregation Consortium)STRA6 (select the gene name)
Genetic variants : HAPMAP64220
Genomic Variants (DGV)STRA6 [DGVbeta]
DECIPHERSTRA6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTRA6 
Mutations
ICGC Data PortalSTRA6 
TCGA Data PortalSTRA6 
Broad Tumor PortalSTRA6
OASIS PortalSTRA6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTRA6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTRA6
LOVD (Leiden Open Variation Database)MRC Human Genetics Unit LOVD at MRC IGMM
BioMutasearch STRA6
DgiDB (Drug Gene Interaction Database)STRA6
DoCM (Curated mutations)STRA6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STRA6 (select a term)
intoGenSTRA6
Cancer3DSTRA6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601186    610745   
Orphanet2283    13955   
MedgenSTRA6
Genetic Testing Registry STRA6
NextProtQ9BX79 [Medical]
TSGene64220
GENETestsSTRA6
Target ValidationSTRA6
Huge Navigator STRA6 [HugePedia]
snp3D : Map Gene to Disease64220
BioCentury BCIQSTRA6
ClinGenSTRA6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64220
Chemical/Pharm GKB GenePA134956551
Clinical trialSTRA6
Miscellaneous
canSAR (ICR)STRA6 (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTRA6
EVEXSTRA6
GoPubMedSTRA6
iHOPSTRA6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:33:34 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.