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STRA8 (stimulated by retinoic acid 8)

Identity

Alias (NCBI)-
HGNC (Hugo) STRA8
HGNC Previous namestimulated by retinoic acid gene 8 homolog (mouse)
 stimulated by retinoic acid 8 homolog (mouse)
LocusID (NCBI) 346673
Atlas_Id 74326
Location 7q33  [Link to chromosome band 7q33]
Location_base_pair Starts at 135231979 and ends at 135258663 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HLCS (21q22.13) / STRA8 (7q33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)STRA8   30653
Cards
Entrez_Gene (NCBI)STRA8    stimulated by retinoic acid 8
Aliases
GeneCards (Weizmann)STRA8
Ensembl hg19 (Hinxton)ENSG00000146857 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146857 [Gene_View]  ENSG00000146857 [Sequence]  chr7:135231979-135258663 [Contig_View]  STRA8 [Vega]
ICGC DataPortalENSG00000146857
TCGA cBioPortalSTRA8
AceView (NCBI)STRA8
Genatlas (Paris)STRA8
SOURCE (Princeton)STRA8
Genetics Home Reference (NIH)STRA8
Genomic and cartography
GoldenPath hg38 (UCSC)STRA8  -     chr7:135231979-135258663 +  7q33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STRA8  -     7q33   [Description]    (hg19-Feb_2009)
GoldenPathSTRA8 - 7q33 [CytoView hg19]  STRA8 - 7q33 [CytoView hg38]
ImmunoBaseENSG00000146857
Genome Data Viewer NCBISTRA8 [Mapview hg19]  
OMIM609987   
Gene and transcription
Genbank (Entrez)AF513502
RefSeq transcript (Entrez)NM_001394401 NM_182489
Consensus coding sequences : CCDS (NCBI)STRA8
Gene ExpressionSTRA8 [ NCBI-GEO ]   STRA8 [ EBI - ARRAY_EXPRESS ]   STRA8 [ SEEK ]   STRA8 [ MEM ]
Gene Expression Viewer (FireBrowse)STRA8 [ Firebrowse - Broad ]
GenevisibleExpression of STRA8 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)346673
GTEX Portal (Tissue expression)STRA8
Human Protein AtlasENSG00000146857-STRA8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z7C7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z7C7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z7C7
PhosPhoSitePlusQ7Z7C7
Domains : Interpro (EBI)HLH_DNA-bd_sf    Stra8   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)STRA8
SuperfamilyQ7Z7C7
AlphaFold pdb e-kbQ7Z7C7   
Human Protein Atlas [tissue]ENSG00000146857-STRA8 [tissue]
HPRD18123
Protein Interaction databases
DIP (DOE-UCLA)Q7Z7C7
IntAct (EBI)Q7Z7C7
BioGRIDSTRA8
STRING (EMBL)STRA8
ZODIACSTRA8
Ontologies - Pathways
QuickGOQ7Z7C7
Ontology : AmiGOprotein binding  nucleus  nucleus  nucleus  cytoplasm  DNA replication  regulation of transcription by RNA polymerase II  spermatogenesis  spermatogenesis  protein dimerization activity  oogenesis  oogenesis  meiotic cell cycle  meiotic cell cycle  cellular response to retinoic acid  activation of meiosis  activation of meiosis  
Ontology : EGO-EBIprotein binding  nucleus  nucleus  nucleus  cytoplasm  DNA replication  regulation of transcription by RNA polymerase II  spermatogenesis  spermatogenesis  protein dimerization activity  oogenesis  oogenesis  meiotic cell cycle  meiotic cell cycle  cellular response to retinoic acid  activation of meiosis  activation of meiosis  
NDEx NetworkSTRA8
Atlas of Cancer Signalling NetworkSTRA8
Wikipedia pathwaysSTRA8
Orthology - Evolution
OrthoDB346673
GeneTree (enSembl)ENSG00000146857
Phylogenetic Trees/Animal Genes : TreeFamSTRA8
Homologs : HomoloGeneSTRA8
Homology/Alignments : Family Browser (UCSC)STRA8
Gene fusions - Rearrangements
Fusion : QuiverSTRA8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTRA8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STRA8
dbVarSTRA8
ClinVarSTRA8
MonarchSTRA8
1000_GenomesSTRA8 
Exome Variant ServerSTRA8
GNOMAD BrowserENSG00000146857
Varsome BrowserSTRA8
ACMGSTRA8 variants
VarityQ7Z7C7
Genomic Variants (DGV)STRA8 [DGVbeta]
DECIPHERSTRA8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTRA8 
Mutations
ICGC Data PortalSTRA8 
TCGA Data PortalSTRA8 
Broad Tumor PortalSTRA8
OASIS PortalSTRA8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTRA8  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSTRA8
Mutations and Diseases : HGMDSTRA8
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSTRA8
DgiDB (Drug Gene Interaction Database)STRA8
DoCM (Curated mutations)STRA8
CIViC (Clinical Interpretations of Variants in Cancer)STRA8
Cancer3DSTRA8
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609987   
Orphanet
DisGeNETSTRA8
MedgenSTRA8
Genetic Testing Registry STRA8
NextProtQ7Z7C7 [Medical]
GENETestsSTRA8
Target ValidationSTRA8
Huge Navigator STRA8 [HugePedia]
ClinGenSTRA8
Clinical trials, drugs, therapy
MyCancerGenomeSTRA8
Protein Interactions : CTDSTRA8
Pharm GKB GenePA162405043
PharosQ7Z7C7
Clinical trialSTRA8
Miscellaneous
canSAR (ICR)STRA8
HarmonizomeSTRA8
DataMed IndexSTRA8
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSTRA8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:24:27 CEST 2021

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