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STRA8 (stimulated by retinoic acid 8)

Identity

Alias_namesstimulated by retinoic acid gene 8 homolog (mouse)
stimulated by retinoic acid 8 homolog (mouse)
Other alias-
HGNC (Hugo) STRA8
LocusID (NCBI) 346673
Atlas_Id 74326
Location 7q33  [Link to chromosome band 7q33]
Location_base_pair Starts at 134916731 and ends at 134943244 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HLCS (21q22.13) / STRA8 (7q33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STRA8   30653
Cards
Entrez_Gene (NCBI)STRA8  346673  stimulated by retinoic acid 8
Aliases
GeneCards (Weizmann)STRA8
Ensembl hg19 (Hinxton)ENSG00000146857 [Gene_View]  chr7:134916731-134943244 [Contig_View]  STRA8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000146857 [Gene_View]  chr7:134916731-134943244 [Contig_View]  STRA8 [Vega]
ICGC DataPortalENSG00000146857
TCGA cBioPortalSTRA8
AceView (NCBI)STRA8
Genatlas (Paris)STRA8
WikiGenes346673
SOURCE (Princeton)STRA8
Genetics Home Reference (NIH)STRA8
Genomic and cartography
GoldenPath hg19 (UCSC)STRA8  -     chr7:134916731-134943244 +  7q33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)STRA8  -     7q33   [Description]    (hg38-Dec_2013)
EnsemblSTRA8 - 7q33 [CytoView hg19]  STRA8 - 7q33 [CytoView hg38]
Mapping of homologs : NCBISTRA8 [Mapview hg19]  STRA8 [Mapview hg38]
OMIM609987   
Gene and transcription
Genbank (Entrez)AB464251 AF513502 BC141427
RefSeq transcript (Entrez)NM_182489
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)STRA8
Cluster EST : UnigeneHs.592279 [ NCBI ]
CGAP (NCI)Hs.592279
Alternative Splicing GalleryENSG00000146857
Gene ExpressionSTRA8 [ NCBI-GEO ]   STRA8 [ EBI - ARRAY_EXPRESS ]   STRA8 [ SEEK ]   STRA8 [ MEM ]
Gene Expression Viewer (FireBrowse)STRA8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)346673
GTEX Portal (Tissue expression)STRA8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z7C7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z7C7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z7C7
Splice isoforms : SwissVarQ7Z7C7
PhosPhoSitePlusQ7Z7C7
Domains : Interpro (EBI)bHLH_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)STRA8
DMDM Disease mutations346673
Blocks (Seattle)STRA8
SuperfamilyQ7Z7C7
Human Protein AtlasENSG00000146857
Peptide AtlasQ7Z7C7
HPRD18123
IPIIPI00376397   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z7C7
IntAct (EBI)Q7Z7C7
FunCoupENSG00000146857
BioGRIDSTRA8
STRING (EMBL)STRA8
ZODIACSTRA8
Ontologies - Pathways
QuickGOQ7Z7C7
Ontology : AmiGOovarian follicle development  nucleus  cytoplasm  DNA replication  female meiosis sister chromatid cohesion  synapsis  reciprocal meiotic recombination  spermatogenesis  fertilization  meiotic chromosome condensation  meiotic DNA replication checkpoint  meiotic DNA double-strand break formation  regulation of organ growth  protein dimerization activity  oocyte development  cellular response to retinoic acid  
Ontology : EGO-EBIovarian follicle development  nucleus  cytoplasm  DNA replication  female meiosis sister chromatid cohesion  synapsis  reciprocal meiotic recombination  spermatogenesis  fertilization  meiotic chromosome condensation  meiotic DNA replication checkpoint  meiotic DNA double-strand break formation  regulation of organ growth  protein dimerization activity  oocyte development  cellular response to retinoic acid  
NDEx NetworkSTRA8
Atlas of Cancer Signalling NetworkSTRA8
Wikipedia pathwaysSTRA8
Orthology - Evolution
OrthoDB346673
GeneTree (enSembl)ENSG00000146857
Phylogenetic Trees/Animal Genes : TreeFamSTRA8
HOVERGENQ7Z7C7
HOGENOMQ7Z7C7
Homologs : HomoloGeneSTRA8
Homology/Alignments : Family Browser (UCSC)STRA8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTRA8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STRA8
dbVarSTRA8
ClinVarSTRA8
1000_GenomesSTRA8 
Exome Variant ServerSTRA8
ExAC (Exome Aggregation Consortium)STRA8 (select the gene name)
Genetic variants : HAPMAP346673
Genomic Variants (DGV)STRA8 [DGVbeta]
DECIPHER (Syndromes)7:134916731-134943244  ENSG00000146857
CONAN: Copy Number AnalysisSTRA8 
Mutations
ICGC Data PortalSTRA8 
TCGA Data PortalSTRA8 
Broad Tumor PortalSTRA8
OASIS PortalSTRA8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTRA8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTRA8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STRA8
DgiDB (Drug Gene Interaction Database)STRA8
DoCM (Curated mutations)STRA8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STRA8 (select a term)
intoGenSTRA8
Cancer3DSTRA8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609987   
Orphanet
MedgenSTRA8
Genetic Testing Registry STRA8
NextProtQ7Z7C7 [Medical]
TSGene346673
GENETestsSTRA8
Huge Navigator STRA8 [HugePedia]
snp3D : Map Gene to Disease346673
BioCentury BCIQSTRA8
ClinGenSTRA8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD346673
Chemical/Pharm GKB GenePA162405043
Clinical trialSTRA8
Miscellaneous
canSAR (ICR)STRA8 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTRA8
EVEXSTRA8
GoPubMedSTRA8
iHOPSTRA8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:59 CET 2017

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