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STRAP (serine/threonine kinase receptor associated protein)

Identity

Other namesMAWD
PT-WD
UNRIP
HGNC (Hugo) STRAP
LocusID (NCBI) 11171
Location 12p12.3
Location_base_pair Starts at 16035288 and ends at 16056410 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)STRAP   30796
Cards
Entrez_Gene (NCBI)STRAP  11171  serine/threonine kinase receptor associated protein
GeneCards (Weizmann)STRAP
Ensembl (Hinxton)ENSG00000023734 [Gene_View]  chr12:16035288-16056410 [Contig_View]  STRAP [Vega]
ICGC DataPortalENSG00000023734
cBioPortalSTRAP
AceView (NCBI)STRAP
Genatlas (Paris)STRAP
WikiGenes11171
SOURCE (Princeton)NM_007178
Genomic and cartography
GoldenPath (UCSC)STRAP  -  12p12.3   chr12:16035288-16056410 +  12p12.3   [Description]    (hg19-Feb_2009)
EnsemblSTRAP - 12p12.3 [CytoView]
Mapping of homologs : NCBISTRAP [Mapview]
OMIM605986   
Gene and transcription
Genbank (Entrez)AB024327 AF161496 AJ010025 AK297942 AK312295
RefSeq transcript (Entrez)NM_007178
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_009714 NW_001838052 NW_004929383
Consensus coding sequences : CCDS (NCBI)STRAP
Cluster EST : UnigeneHs.743971 [ NCBI ]
CGAP (NCI)Hs.743971
Alternative Splicing : Fast-db (Paris)GSHG0006510
Alternative Splicing GalleryENSG00000023734
Gene ExpressionSTRAP [ NCBI-GEO ]     STRAP [ SEEK ]   STRAP [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3F4 (Uniprot)
NextProtQ9Y3F4  [Medical]
With graphics : InterProQ9Y3F4
Splice isoforms : SwissVarQ9Y3F4 (Swissvar)
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)G-protein_beta_WD-40_rep [organisation]   WD40/YVTN_repeat-like_dom [organisation]   WD40_repeat [organisation]   WD40_repeat_CS [organisation]   WD40_repeat_dom [organisation]  
Related proteins : CluSTrQ9Y3F4
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
DMDM Disease mutations11171
Blocks (Seattle)Q9Y3F4
Human Protein AtlasENSG00000023734 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9Y3F4
HPRD05816
IPIIPI00941907   IPI01015342   IPI01013159   IPI00294536   IPI01011918   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3F4
IntAct (EBI)Q9Y3F4
FunCoupENSG00000023734
BioGRIDSTRAP
InParanoidQ9Y3F4
Interologous Interaction database Q9Y3F4
IntegromeDBSTRAP
STRING (EMBL)STRAP
Ontologies - Pathways
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  spliceosomal snRNP assembly  receptor binding  protein binding  nucleus  cytoplasm  cytosol  cytosol  plasma membrane  transforming growth factor beta receptor signaling pathway  negative regulation of epithelial cell migration  negative regulation of epithelial to mesenchymal transition  cell junction  maintenance of gastrointestinal epithelium  negative regulation of transforming growth factor beta receptor signaling pathway  negative regulation of transforming growth factor beta receptor signaling pathway  SMN complex  SMN-Sm protein complex  poly(A) RNA binding  negative regulation of epithelial cell proliferation  negative regulation of pathway-restricted SMAD protein phosphorylation  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  spliceosomal snRNP assembly  receptor binding  protein binding  nucleus  cytoplasm  cytosol  cytosol  plasma membrane  transforming growth factor beta receptor signaling pathway  negative regulation of epithelial cell migration  negative regulation of epithelial to mesenchymal transition  cell junction  maintenance of gastrointestinal epithelium  negative regulation of transforming growth factor beta receptor signaling pathway  negative regulation of transforming growth factor beta receptor signaling pathway  SMN complex  SMN-Sm protein complex  poly(A) RNA binding  negative regulation of epithelial cell proliferation  negative regulation of pathway-restricted SMAD protein phosphorylation  
Pathways : KEGGRNA transport   
Protein Interaction DatabaseSTRAP
Wikipedia pathwaysSTRAP
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)STRAP
snp3D : Map Gene to Disease11171
SNP (GeneSNP Utah)STRAP
SNP : HGBaseSTRAP
Genetic variants : HAPMAPSTRAP
Exome VariantSTRAP
1000_GenomesSTRAP 
ICGC programENSG00000023734 
Somatic Mutations in Cancer : COSMICSTRAP 
CONAN: Copy Number AnalysisSTRAP 
Mutations and Diseases : HGMDSTRAP
Mutations and Diseases : intOGenSTRAP
Genomic VariantsSTRAP  STRAP [DGVbeta]
dbVarSTRAP
ClinVarSTRAP
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM605986   
MedgenSTRAP
GENETestsSTRAP
Disease Genetic AssociationSTRAP
Huge Navigator STRAP [HugePedia]  STRAP [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneSTRAP
Homology/Alignments : Family Browser (UCSC)STRAP
Phylogenetic Trees/Animal Genes : TreeFamSTRAP
Chemical/Protein Interactions : CTD11171
Chemical/Pharm GKB GenePA134867032
Clinical trialSTRAP
Cancer Resource (Charite)ENSG00000023734
Other databases
Probes
Litterature
PubMed59 Pubmed reference(s) in Entrez
CoreMineSTRAP
iHOPSTRAP
OncoSearchSTRAP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 17:06:38 CEST 2014

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