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STRBP (spermatid perinuclear RNA binding protein)

Identity

Alias_namesILF3L
spermatid perinuclear RNA-binding protein
interleukin enhancer binding factor 3-like
Alias_symbol (synonym)FLJ11307
SPNR
Other aliasHEL162
p74
HGNC (Hugo) STRBP
LocusID (NCBI) 55342
Atlas_Id 54673
Location 9q33.3  [Link to chromosome band 9q33]
Location_base_pair Starts at 123121629 and ends at 123268564 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MIR600HG (9q33.3) / STRBP (9q33.3)STRBP (9q33.3) / ASTN2 (9q33.1)STRBP (9q33.3) / ATG14 (14q22.3)
STRBP (9q33.3) / DENND1A (9q33.3)STRBP (9q33.3) / SLC35A5 (3q13.2)STRBP (9q33.3) / STRBP (9q33.3)
STRBP 9q33.3 / ASTN2 9q33.1STRBP 9q33.3 / ATG14 14q22.3STRBP 9q33.3 / DENND1A 9q33.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 4 ]
  STRBP/ASTN2 (9q33)
STRBP/DENND1A (9q33)
STRBP/DENND1A (9q33)
t(9;14)(q33;q22) STRBP/ATG14


External links

Nomenclature
HGNC (Hugo)STRBP   16462
Cards
Entrez_Gene (NCBI)STRBP  55342  spermatid perinuclear RNA binding protein
AliasesHEL162; ILF3L; SPNR; p74
GeneCards (Weizmann)STRBP
Ensembl hg19 (Hinxton)ENSG00000165209 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165209 [Gene_View]  ENSG00000165209 [Sequence]  chr9:123121629-123268564 [Contig_View]  STRBP [Vega]
ICGC DataPortalENSG00000165209
TCGA cBioPortalSTRBP
AceView (NCBI)STRBP
Genatlas (Paris)STRBP
WikiGenes55342
SOURCE (Princeton)STRBP
Genetics Home Reference (NIH)STRBP
Genomic and cartography
GoldenPath hg38 (UCSC)STRBP  -     chr9:123121629-123268564 -  9q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STRBP  -     9q33.3   [Description]    (hg19-Feb_2009)
STRBP - 9q33.3 [CytoView hg19]  STRBP - 9q33.3 [CytoView hg38]
Mapping of homologs : NCBISTRBP [Mapview hg19]  STRBP [Mapview hg38]
OMIM611138   
Gene and transcription
Genbank (Entrez)AF333337 AI986141 AK002169 AK024285 AK025613
RefSeq transcript (Entrez)NM_001171137 NM_018387
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STRBP
Cluster EST : UnigeneHs.694157 [ NCBI ]
CGAP (NCI)Hs.694157
Alternative Splicing GalleryENSG00000165209
Gene ExpressionSTRBP [ NCBI-GEO ]   STRBP [ EBI - ARRAY_EXPRESS ]   STRBP [ SEEK ]   STRBP [ MEM ]
Gene Expression Viewer (FireBrowse)STRBP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55342
GTEX Portal (Tissue expression)STRBP
Human Protein AtlasENSG00000165209-STRBP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96SI9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96SI9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96SI9
Splice isoforms : SwissVarQ96SI9
PhosPhoSitePlusQ96SI9
Domaine pattern : Prosite (Expaxy)DS_RBD (PS50137)    DZF (PS51703)   
Domains : Interpro (EBI)dsRBD_dom    DZF_dom    STRBP   
Domain families : Pfam (Sanger)dsrm (PF00035)    DZF (PF07528)   
Domain families : Pfam (NCBI)pfam00035    pfam07528   
Domain families : Smart (EMBL)DSRM (SM00358)  DZF (SM00572)  
Conserved Domain (NCBI)STRBP
DMDM Disease mutations55342
Blocks (Seattle)STRBP
PDB (RSDB)2DMY   
PDB Europe2DMY   
PDB (PDBSum)2DMY   
PDB (IMB)2DMY   
Structural Biology KnowledgeBase2DMY   
SCOP (Structural Classification of Proteins)2DMY   
CATH (Classification of proteins structures)2DMY   
SuperfamilyQ96SI9
Human Protein Atlas [tissue]ENSG00000165209-STRBP [tissue]
Peptide AtlasQ96SI9
HPRD10257
IPIIPI00169430   IPI00413860   IPI00847994   IPI00984013   IPI00982693   IPI01014538   IPI00552488   IPI00984647   
Protein Interaction databases
DIP (DOE-UCLA)Q96SI9
IntAct (EBI)Q96SI9
FunCoupENSG00000165209
BioGRIDSTRBP
STRING (EMBL)STRBP
ZODIACSTRBP
Ontologies - Pathways
QuickGOQ96SI9
Ontology : AmiGOmanchette  DNA binding  RNA binding  double-stranded RNA binding  single-stranded RNA binding  protein binding  nucleus  nucleus  cytoplasm  multicellular organism development  spermatid development  mechanosensory behavior  microtubule binding  
Ontology : EGO-EBImanchette  DNA binding  RNA binding  double-stranded RNA binding  single-stranded RNA binding  protein binding  nucleus  nucleus  cytoplasm  multicellular organism development  spermatid development  mechanosensory behavior  microtubule binding  
NDEx NetworkSTRBP
Atlas of Cancer Signalling NetworkSTRBP
Wikipedia pathwaysSTRBP
Orthology - Evolution
OrthoDB55342
GeneTree (enSembl)ENSG00000165209
Phylogenetic Trees/Animal Genes : TreeFamSTRBP
HOGENOMQ96SI9
Homologs : HomoloGeneSTRBP
Homology/Alignments : Family Browser (UCSC)STRBP
Gene fusions - Rearrangements
Fusion : MitelmanSTRBP/ASTN2 [9q33.3/9q33.1]  
Fusion : MitelmanSTRBP/ATG14 [9q33.3/14q22.3]  [t(9;14)(q33;q22)]  
Fusion : MitelmanSTRBP/DENND1A [9q33.3/9q33.3]  [t(9;9)(q33;q33)]  
Fusion PortalSTRBP 9q33.3 ASTN2 9q33.1 LUAD
Fusion PortalSTRBP 9q33.3 ATG14 14q22.3 BRCA
Fusion PortalSTRBP 9q33.3 DENND1A 9q33.3 BRCA
Fusion Cancer (Beijing)NCRNA00287 [STRBP]  -  9q33.3 [FUSC000313]
Fusion : QuiverSTRBP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTRBP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STRBP
dbVarSTRBP
ClinVarSTRBP
1000_GenomesSTRBP 
Exome Variant ServerSTRBP
ExAC (Exome Aggregation Consortium)ENSG00000165209
GNOMAD BrowserENSG00000165209
Varsome BrowserSTRBP
Genetic variants : HAPMAP55342
Genomic Variants (DGV)STRBP [DGVbeta]
DECIPHERSTRBP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTRBP 
Mutations
ICGC Data PortalSTRBP 
TCGA Data PortalSTRBP 
Broad Tumor PortalSTRBP
OASIS PortalSTRBP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTRBP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTRBP
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch STRBP
DgiDB (Drug Gene Interaction Database)STRBP
DoCM (Curated mutations)STRBP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STRBP (select a term)
intoGenSTRBP
Cancer3DSTRBP(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611138   
Orphanet
DisGeNETSTRBP
MedgenSTRBP
Genetic Testing Registry STRBP
NextProtQ96SI9 [Medical]
TSGene55342
GENETestsSTRBP
Target ValidationSTRBP
Huge Navigator STRBP [HugePedia]
snp3D : Map Gene to Disease55342
BioCentury BCIQSTRBP
ClinGenSTRBP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55342
Chemical/Pharm GKB GenePA38145
Clinical trialSTRBP
Miscellaneous
canSAR (ICR)STRBP (select the gene name)
DataMed IndexSTRBP
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTRBP
EVEXSTRBP
GoPubMedSTRBP
iHOPSTRBP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu May 2 13:12:43 CEST 2019

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