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STRC (stereocilin)

Identity

Alias_namesDFNB16
Other alias
HGNC (Hugo) STRC
LocusID (NCBI) 161497
Atlas_Id 74327
Location 15q15.3  [Link to chromosome band 15q15]
Location_base_pair Starts at 43891761 and ends at 43910998 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STRC   16035
Cards
Entrez_Gene (NCBI)STRC  161497  stereocilin
AliasesDFNB16
GeneCards (Weizmann)STRC
Ensembl hg19 (Hinxton)ENSG00000242866 [Gene_View]  chr15:43891761-43910998 [Contig_View]  STRC [Vega]
Ensembl hg38 (Hinxton)ENSG00000242866 [Gene_View]  chr15:43891761-43910998 [Contig_View]  STRC [Vega]
ICGC DataPortalENSG00000242866
TCGA cBioPortalSTRC
AceView (NCBI)STRC
Genatlas (Paris)STRC
WikiGenes161497
SOURCE (Princeton)STRC
Genetics Home Reference (NIH)STRC
Genomic and cartography
GoldenPath hg19 (UCSC)STRC  -     chr15:43891761-43910998 -  15q15.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)STRC  -     15q15.3   [Description]    (hg38-Dec_2013)
EnsemblSTRC - 15q15.3 [CytoView hg19]  STRC - 15q15.3 [CytoView hg38]
Mapping of homologs : NCBISTRC [Mapview hg19]  STRC [Mapview hg38]
OMIM603720   606440   611102   612997   
Gene and transcription
Genbank (Entrez)AK090757 AK122814 AK124582 AK126721 AK296993
RefSeq transcript (Entrez)NM_153700
RefSeq genomic (Entrez)NC_000015 NC_018926 NG_011636 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)STRC
Cluster EST : UnigeneHs.657395 [ NCBI ]
CGAP (NCI)Hs.657395
Alternative Splicing GalleryENSG00000242866
Gene ExpressionSTRC [ NCBI-GEO ]   STRC [ EBI - ARRAY_EXPRESS ]   STRC [ SEEK ]   STRC [ MEM ]
Gene Expression Viewer (FireBrowse)STRC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)161497
GTEX Portal (Tissue expression)STRC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTU9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7RTU9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7RTU9
Splice isoforms : SwissVarQ7RTU9
PhosPhoSitePlusQ7RTU9
Domains : Interpro (EBI)Stereocilin    Stereocilin_related   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)STRC
DMDM Disease mutations161497
Blocks (Seattle)STRC
SuperfamilyQ7RTU9
Human Protein AtlasENSG00000242866
Peptide AtlasQ7RTU9
HPRD08403
IPIIPI00170605   IPI00983989   IPI01011542   IPI00852990   IPI00879471   IPI00878290   IPI00892990   
Protein Interaction databases
DIP (DOE-UCLA)Q7RTU9
IntAct (EBI)Q7RTU9
FunCoupENSG00000242866
BioGRIDSTRC
STRING (EMBL)STRC
ZODIACSTRC
Ontologies - Pathways
QuickGOQ7RTU9
Ontology : AmiGOcell surface  stereocilium  stereocilium bundle tip  detection of mechanical stimulus involved in sensory perception of sound  auditory receptor cell stereocilium organization  kinocilium  
Ontology : EGO-EBIcell surface  stereocilium  stereocilium bundle tip  detection of mechanical stimulus involved in sensory perception of sound  auditory receptor cell stereocilium organization  kinocilium  
NDEx NetworkSTRC
Atlas of Cancer Signalling NetworkSTRC
Wikipedia pathwaysSTRC
Orthology - Evolution
OrthoDB161497
GeneTree (enSembl)ENSG00000242866
Phylogenetic Trees/Animal Genes : TreeFamSTRC
HOVERGENQ7RTU9
HOGENOMQ7RTU9
Homologs : HomoloGeneSTRC
Homology/Alignments : Family Browser (UCSC)STRC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTRC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STRC
dbVarSTRC
ClinVarSTRC
1000_GenomesSTRC 
Exome Variant ServerSTRC
ExAC (Exome Aggregation Consortium)STRC (select the gene name)
Genetic variants : HAPMAP161497
Genomic Variants (DGV)STRC [DGVbeta]
DECIPHER (Syndromes)15:43891761-43910998  ENSG00000242866
CONAN: Copy Number AnalysisSTRC 
Mutations
ICGC Data PortalSTRC 
TCGA Data PortalSTRC 
Broad Tumor PortalSTRC
OASIS PortalSTRC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTRC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTRC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STRC
DgiDB (Drug Gene Interaction Database)STRC
DoCM (Curated mutations)STRC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STRC (select a term)
intoGenSTRC
Cancer3DSTRC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603720    606440    611102    612997   
Orphanet12047    12545   
MedgenSTRC
Genetic Testing Registry STRC
NextProtQ7RTU9 [Medical]
TSGene161497
GENETestsSTRC
Huge Navigator STRC [HugePedia]
snp3D : Map Gene to Disease161497
BioCentury BCIQSTRC
ClinGenSTRC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD161497
Chemical/Pharm GKB GenePA38082
Clinical trialSTRC
Miscellaneous
canSAR (ICR)STRC (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTRC
EVEXSTRC
GoPubMedSTRC
iHOPSTRC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:59 CET 2017

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