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STRCP1 (stereocilin pseudogene 1)

Identity

Other aliasSTRCP
HGNC (Hugo) STRCP1
LocusID (NCBI) 554225
Atlas_Id 78643
Location 15q15.3  [Link to chromosome band 15q15]
Location_base_pair Starts at 43699418 and ends at 43718260 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STRCP1   33915
Cards
Entrez_Gene (NCBI)STRCP1  554225  stereocilin pseudogene 1
AliasesSTRCP
GeneCards (Weizmann)STRCP1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:43699418-43718260 [Contig_View]  STRCP1 [Vega]
TCGA cBioPortalSTRCP1
AceView (NCBI)STRCP1
Genatlas (Paris)STRCP1
WikiGenes554225
SOURCE (Princeton)STRCP1
Genetics Home Reference (NIH)STRCP1
Genomic and cartography
GoldenPath hg38 (UCSC)STRCP1  -     chr15:43699418-43718260 -  15q15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STRCP1  -     15q15.3   [Description]    (hg19-Feb_2009)
EnsemblSTRCP1 - 15q15.3 [CytoView hg19]  STRCP1 - 15q15.3 [CytoView hg38]
Mapping of homologs : NCBISTRCP1 [Mapview hg19]  STRCP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC129932
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STRCP1
Cluster EST : UnigeneHs.657395 [ NCBI ]
CGAP (NCI)Hs.657395
Gene ExpressionSTRCP1 [ NCBI-GEO ]   STRCP1 [ EBI - ARRAY_EXPRESS ]   STRCP1 [ SEEK ]   STRCP1 [ MEM ]
Gene Expression Viewer (FireBrowse)STRCP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)554225
GTEX Portal (Tissue expression)STRCP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NGW2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NGW2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NGW2
Splice isoforms : SwissVarA6NGW2
PhosPhoSitePlusA6NGW2
Domains : Interpro (EBI)Stereocilin    Stereocilin-rel   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)STRCP1
DMDM Disease mutations554225
Blocks (Seattle)STRCP1
SuperfamilyA6NGW2
Peptide AtlasA6NGW2
IPIIPI00740650   
Protein Interaction databases
DIP (DOE-UCLA)A6NGW2
IntAct (EBI)A6NGW2
BioGRIDSTRCP1
STRING (EMBL)STRCP1
ZODIACSTRCP1
Ontologies - Pathways
QuickGOA6NGW2
Ontology : AmiGOextracellular region  cell-matrix adhesion  sensory perception of sound  cell surface  stereocilium tip  kinocilium  
Ontology : EGO-EBIextracellular region  cell-matrix adhesion  sensory perception of sound  cell surface  stereocilium tip  kinocilium  
NDEx NetworkSTRCP1
Atlas of Cancer Signalling NetworkSTRCP1
Wikipedia pathwaysSTRCP1
Orthology - Evolution
OrthoDB554225
Phylogenetic Trees/Animal Genes : TreeFamSTRCP1
HOVERGENA6NGW2
HOGENOMA6NGW2
Homologs : HomoloGeneSTRCP1
Homology/Alignments : Family Browser (UCSC)STRCP1
Gene fusions - Rearrangements
Tumor Fusion PortalSTRCP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTRCP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STRCP1
dbVarSTRCP1
ClinVarSTRCP1
1000_GenomesSTRCP1 
Exome Variant ServerSTRCP1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP554225
Genomic Variants (DGV)STRCP1 [DGVbeta]
DECIPHERSTRCP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTRCP1 
Mutations
ICGC Data PortalSTRCP1 
TCGA Data PortalSTRCP1 
Broad Tumor PortalSTRCP1
OASIS PortalSTRCP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSTRCP1
BioMutasearch STRCP1
DgiDB (Drug Gene Interaction Database)STRCP1
DoCM (Curated mutations)STRCP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STRCP1 (select a term)
intoGenSTRCP1
Cancer3DSTRCP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSTRCP1
MedgenSTRCP1
Genetic Testing Registry STRCP1
NextProtA6NGW2 [Medical]
TSGene554225
GENETestsSTRCP1
Target ValidationSTRCP1
Huge Navigator STRCP1 [HugePedia]
snp3D : Map Gene to Disease554225
BioCentury BCIQSTRCP1
ClinGenSTRCP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD554225
Clinical trialSTRCP1
Miscellaneous
canSAR (ICR)STRCP1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTRCP1
EVEXSTRCP1
GoPubMedSTRCP1
iHOPSTRCP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:32:34 CET 2017

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