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STRIP1 (striatin interacting protein 1)

Identity

Alias_namesFAM40A
family with sequence similarity 40, member A
Alias_symbol (synonym)FLJ14743
KIAA1761
FAR11A
Other alias
HGNC (Hugo) STRIP1
LocusID (NCBI) 85369
Atlas_Id 55729
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 110034601 and ends at 110054641 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)STRIP1   25916
Cards
Entrez_Gene (NCBI)STRIP1  85369  striatin interacting protein 1
AliasesFAM40A; FAR11A
GeneCards (Weizmann)STRIP1
Ensembl hg19 (Hinxton)ENSG00000143093 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143093 [Gene_View]  ENSG00000143093 [Sequence]  chr1:110034601-110054641 [Contig_View]  STRIP1 [Vega]
ICGC DataPortalENSG00000143093
TCGA cBioPortalSTRIP1
AceView (NCBI)STRIP1
Genatlas (Paris)STRIP1
WikiGenes85369
SOURCE (Princeton)STRIP1
Genetics Home Reference (NIH)STRIP1
Genomic and cartography
GoldenPath hg38 (UCSC)STRIP1  -     chr1:110034601-110054641 +  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STRIP1  -     1p13.3   [Description]    (hg19-Feb_2009)
GoldenPathSTRIP1 - 1p13.3 [CytoView hg19]  STRIP1 - 1p13.3 [CytoView hg38]
ImmunoBaseENSG00000143093
Mapping of homologs : NCBISTRIP1 [Mapview hg19]  STRIP1 [Mapview hg38]
OMIM617918   
Gene and transcription
Genbank (Entrez)AB051548 AK027649 AK098023 AK125054 AK291059
RefSeq transcript (Entrez)NM_001270768 NM_033088
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STRIP1
Cluster EST : UnigeneHs.584996 [ NCBI ]
CGAP (NCI)Hs.584996
Alternative Splicing GalleryENSG00000143093
Gene ExpressionSTRIP1 [ NCBI-GEO ]   STRIP1 [ EBI - ARRAY_EXPRESS ]   STRIP1 [ SEEK ]   STRIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)STRIP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85369
GTEX Portal (Tissue expression)STRIP1
Human Protein AtlasENSG00000143093-STRIP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VSL9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VSL9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VSL9
Splice isoforms : SwissVarQ5VSL9
PhosPhoSitePlusQ5VSL9
Domains : Interpro (EBI)Far11/STRP_C    Far11/STRP_N   
Domain families : Pfam (Sanger)DUF3402 (PF11882)    N1221 (PF07923)   
Domain families : Pfam (NCBI)pfam11882    pfam07923   
Domain families : Smart (EMBL)DUF3402 (SM01293)  N1221 (SM01292)  
Conserved Domain (NCBI)STRIP1
DMDM Disease mutations85369
Blocks (Seattle)STRIP1
SuperfamilyQ5VSL9
Human Protein Atlas [tissue]ENSG00000143093-STRIP1 [tissue]
Peptide AtlasQ5VSL9
IPIIPI00549766   IPI00619947   IPI00304540   IPI00470377   IPI00445387   
Protein Interaction databases
DIP (DOE-UCLA)Q5VSL9
IntAct (EBI)Q5VSL9
FunCoupENSG00000143093
BioGRIDSTRIP1
STRING (EMBL)STRIP1
ZODIACSTRIP1
Ontologies - Pathways
QuickGOQ5VSL9
Ontology : AmiGOmolecular_function  protein binding  nucleus  cytosol  Rho GTPase binding  protein kinase binding  regulation of cell morphogenesis  cortical actin cytoskeleton organization  extracellular exosome  
Ontology : EGO-EBImolecular_function  protein binding  nucleus  cytosol  Rho GTPase binding  protein kinase binding  regulation of cell morphogenesis  cortical actin cytoskeleton organization  extracellular exosome  
NDEx NetworkSTRIP1
Atlas of Cancer Signalling NetworkSTRIP1
Wikipedia pathwaysSTRIP1
Orthology - Evolution
OrthoDB85369
GeneTree (enSembl)ENSG00000143093
Phylogenetic Trees/Animal Genes : TreeFamSTRIP1
HOGENOMQ5VSL9
Homologs : HomoloGeneSTRIP1
Homology/Alignments : Family Browser (UCSC)STRIP1
Gene fusions - Rearrangements
Fusion : QuiverSTRIP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTRIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STRIP1
dbVarSTRIP1
ClinVarSTRIP1
1000_GenomesSTRIP1 
Exome Variant ServerSTRIP1
ExAC (Exome Aggregation Consortium)ENSG00000143093
GNOMAD BrowserENSG00000143093
Varsome BrowserSTRIP1
Genetic variants : HAPMAP85369
Genomic Variants (DGV)STRIP1 [DGVbeta]
DECIPHERSTRIP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTRIP1 
Mutations
ICGC Data PortalSTRIP1 
TCGA Data PortalSTRIP1 
Broad Tumor PortalSTRIP1
OASIS PortalSTRIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTRIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSTRIP1
Mutations and Diseases : HGMDSTRIP1
BioMutasearch STRIP1
DgiDB (Drug Gene Interaction Database)STRIP1
DoCM (Curated mutations)STRIP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STRIP1 (select a term)
intoGenSTRIP1
Cancer3DSTRIP1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617918   
Orphanet
DisGeNETSTRIP1
MedgenSTRIP1
Genetic Testing Registry STRIP1
NextProtQ5VSL9 [Medical]
TSGene85369
GENETestsSTRIP1
Target ValidationSTRIP1
Huge Navigator STRIP1 [HugePedia]
snp3D : Map Gene to Disease85369
BioCentury BCIQSTRIP1
ClinGenSTRIP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85369
Chemical/Pharm GKB GenePA134939426
Clinical trialSTRIP1
Miscellaneous
canSAR (ICR)STRIP1 (select the gene name)
DataMed IndexSTRIP1
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTRIP1
EVEXSTRIP1
GoPubMedSTRIP1
iHOPSTRIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 18:10:11 CET 2019
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