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STRIP2 (striatin interacting protein 2)

Identity

Alias_namesFAM40B
family with sequence similarity 40
Alias_symbol (synonym)KIAA1170
FAR11B
Other alias
HGNC (Hugo) STRIP2
LocusID (NCBI) 57464
Atlas_Id 55722
Location 7q32.1  [Link to chromosome band 7q32]
Location_base_pair Starts at 129434433 and ends at 129483631 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NRF1 (7q32.2) / STRIP2 (7q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STRIP2   22209
Cards
Entrez_Gene (NCBI)STRIP2  57464  striatin interacting protein 2
AliasesFAM40B; FAR11B
GeneCards (Weizmann)STRIP2
Ensembl hg19 (Hinxton)ENSG00000128578 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128578 [Gene_View]  chr7:129434433-129483631 [Contig_View]  STRIP2 [Vega]
ICGC DataPortalENSG00000128578
TCGA cBioPortalSTRIP2
AceView (NCBI)STRIP2
Genatlas (Paris)STRIP2
WikiGenes57464
SOURCE (Princeton)STRIP2
Genetics Home Reference (NIH)STRIP2
Genomic and cartography
GoldenPath hg38 (UCSC)STRIP2  -     chr7:129434433-129483631 +  7q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STRIP2  -     7q32.1   [Description]    (hg19-Feb_2009)
EnsemblSTRIP2 - 7q32.1 [CytoView hg19]  STRIP2 - 7q32.1 [CytoView hg38]
Mapping of homologs : NCBISTRIP2 [Mapview hg19]  STRIP2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB032996 AK290165 AK302339 AM392619 AM392944
RefSeq transcript (Entrez)NM_001134336 NM_020704
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STRIP2
Cluster EST : UnigeneHs.489988 [ NCBI ]
CGAP (NCI)Hs.489988
Alternative Splicing GalleryENSG00000128578
Gene ExpressionSTRIP2 [ NCBI-GEO ]   STRIP2 [ EBI - ARRAY_EXPRESS ]   STRIP2 [ SEEK ]   STRIP2 [ MEM ]
Gene Expression Viewer (FireBrowse)STRIP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57464
GTEX Portal (Tissue expression)STRIP2
Human Protein AtlasENSG00000128578-STRIP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULQ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULQ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULQ0
Splice isoforms : SwissVarQ9ULQ0
PhosPhoSitePlusQ9ULQ0
Domains : Interpro (EBI)DUF3402    N1221   
Domain families : Pfam (Sanger)DUF3402 (PF11882)    N1221 (PF07923)   
Domain families : Pfam (NCBI)pfam11882    pfam07923   
Domain families : Smart (EMBL)DUF3402 (SM01293)  N1221 (SM01292)  
Conserved Domain (NCBI)STRIP2
DMDM Disease mutations57464
Blocks (Seattle)STRIP2
SuperfamilyQ9ULQ0
Human Protein Atlas [tissue]ENSG00000128578-STRIP2 [tissue]
Peptide AtlasQ9ULQ0
HPRD16880
IPIIPI00005300   IPI00607651   IPI00922259   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULQ0
IntAct (EBI)Q9ULQ0
FunCoupENSG00000128578
BioGRIDSTRIP2
STRING (EMBL)STRIP2
ZODIACSTRIP2
Ontologies - Pathways
QuickGOQ9ULQ0
Ontology : AmiGOmolecular_function  cytoplasm  cytosol  cytoskeleton organization  regulation of cell shape  cell migration  
Ontology : EGO-EBImolecular_function  cytoplasm  cytosol  cytoskeleton organization  regulation of cell shape  cell migration  
NDEx NetworkSTRIP2
Atlas of Cancer Signalling NetworkSTRIP2
Wikipedia pathwaysSTRIP2
Orthology - Evolution
OrthoDB57464
GeneTree (enSembl)ENSG00000128578
Phylogenetic Trees/Animal Genes : TreeFamSTRIP2
HOVERGENQ9ULQ0
HOGENOMQ9ULQ0
Homologs : HomoloGeneSTRIP2
Homology/Alignments : Family Browser (UCSC)STRIP2
Gene fusions - Rearrangements
Tumor Fusion PortalSTRIP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTRIP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STRIP2
dbVarSTRIP2
ClinVarSTRIP2
1000_GenomesSTRIP2 
Exome Variant ServerSTRIP2
ExAC (Exome Aggregation Consortium)ENSG00000128578
GNOMAD BrowserENSG00000128578
Genetic variants : HAPMAP57464
Genomic Variants (DGV)STRIP2 [DGVbeta]
DECIPHERSTRIP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTRIP2 
Mutations
ICGC Data PortalSTRIP2 
TCGA Data PortalSTRIP2 
Broad Tumor PortalSTRIP2
OASIS PortalSTRIP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTRIP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTRIP2
BioMutasearch STRIP2
DgiDB (Drug Gene Interaction Database)STRIP2
DoCM (Curated mutations)STRIP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STRIP2 (select a term)
intoGenSTRIP2
Cancer3DSTRIP2(select the gene name)
Impact of mutations[PolyPhun2]<'A~ [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSTRIP2
MedgenSTRIP2
Genetic Testing Registry STRIP2
NextProtQ9ULQ0 [Medical]
TSGene57464
GENETestsSTRIP2
Target ValidationSTRIP2
Huge Navigator STRIP2 [HugePedia]
snp3D : Map Gene to Disease57464
BioCentury BCIQSTRIP2
ClinGenSTRIP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57464
Chemical/Pharm GKB GenePA134923427
Clinical trialSTRIP2
Miscellaneous
canSAR (ICR)STRIP2 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTRIP2
EVEXSTRIP2
GoPubMedSTRIP2
iHOPSTRIP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:37:05 CET 2017

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