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STUM (stum, mechanosensory transduction mediator homolog)

Identity

Alias_namesC1orf95
chromosome 1 open reading frame 95
Alias_symbol (synonym)DKFZp761P211
Other alias
HGNC (Hugo) STUM
LocusID (NCBI) 375057
Atlas_Id 78552
Location 1q42.12  [Link to chromosome band 1q42]
Location_base_pair Starts at 226548800 and ends at 226609214 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STUM   30491
Cards
Entrez_Gene (NCBI)STUM  375057  stum, mechanosensory transduction mediator homolog
AliasesC1orf95
GeneCards (Weizmann)STUM
Ensembl hg19 (Hinxton)ENSG00000203685 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203685 [Gene_View]  chr1:226548800-226609214 [Contig_View]  STUM [Vega]
ICGC DataPortalENSG00000203685
TCGA cBioPortalSTUM
AceView (NCBI)STUM
Genatlas (Paris)STUM
WikiGenes375057
SOURCE (Princeton)STUM
Genetics Home Reference (NIH)STUM
Genomic and cartography
GoldenPath hg38 (UCSC)STUM  -     chr1:226548800-226609214 +  1q42.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STUM  -     1q42.12   [Description]    (hg19-Feb_2009)
EnsemblSTUM - 1q42.12 [CytoView hg19]  STUM - 1q42.12 [CytoView hg38]
Mapping of homologs : NCBISTUM [Mapview hg19]  STUM [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF035308 AL134612 AL137507 AM393750 BC141659
RefSeq transcript (Entrez)NM_001003665
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STUM
Cluster EST : UnigeneHs.116827 [ NCBI ]
CGAP (NCI)Hs.116827
Alternative Splicing GalleryENSG00000203685
Gene ExpressionSTUM [ NCBI-GEO ]   STUM [ EBI - ARRAY_EXPRESS ]   STUM [ SEEK ]   STUM [ MEM ]
Gene Expression Viewer (FireBrowse)STUM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)375057
GTEX Portal (Tissue expression)STUM
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ69YW2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ69YW2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ69YW2
Splice isoforms : SwissVarQ69YW2
PhosPhoSitePlusQ69YW2
Domains : Interpro (EBI)SPEC3/Stum   
Domain families : Pfam (Sanger)Spec3 (PF15795)   
Domain families : Pfam (NCBI)pfam15795   
Conserved Domain (NCBI)STUM
DMDM Disease mutations375057
Blocks (Seattle)STUM
SuperfamilyQ69YW2
Human Protein AtlasENSG00000203685
Peptide AtlasQ69YW2
HPRD16821
IPIIPI00402088   IPI00873138   
Protein Interaction databases
DIP (DOE-UCLA)Q69YW2
IntAct (EBI)Q69YW2
FunCoupENSG00000203685
BioGRIDSTUM
STRING (EMBL)STUM
ZODIACSTUM
Ontologies - Pathways
QuickGOQ69YW2
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSTUM
Atlas of Cancer Signalling NetworkSTUM
Wikipedia pathwaysSTUM
Orthology - Evolution
OrthoDB375057
GeneTree (enSembl)ENSG00000203685
Phylogenetic Trees/Animal Genes : TreeFamSTUM
HOVERGENQ69YW2
HOGENOMQ69YW2
Homologs : HomoloGeneSTUM
Homology/Alignments : Family Browser (UCSC)STUM
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTUM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STUM
dbVarSTUM
ClinVarSTUM
1000_GenomesSTUM 
Exome Variant ServerSTUM
ExAC (Exome Aggregation Consortium)STUM (select the gene name)
Genetic variants : HAPMAP375057
Genomic Variants (DGV)STUM [DGVbeta]
DECIPHERSTUM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTUM 
Mutations
ICGC Data PortalSTUM 
TCGA Data PortalSTUM 
Broad Tumor PortalSTUM
OASIS PortalSTUM [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSTUM
BioMutasearch STUM
DgiDB (Drug Gene Interaction Database)STUM
DoCM (Curated mutations)STUM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STUM (select a term)
intoGenSTUM
Cancer3DSTUM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSTUM
Genetic Testing Registry STUM
NextProtQ69YW2 [Medical]
TSGene375057
GENETestsSTUM
Target ValidationSTUM
Huge Navigator STUM [HugePedia]
snp3D : Map Gene to Disease375057
BioCentury BCIQSTUM
ClinGenSTUM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD375057
Chemical/Pharm GKB GenePA142672479
Clinical trialSTUM
Miscellaneous
canSAR (ICR)STUM (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTUM
EVEXSTUM
GoPubMedSTUM
iHOPSTUM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:44:27 CEST 2017

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