Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

STX10 (syntaxin 10)

Identity

Alias_symbol (synonym)hsyn10
SYN10
Other alias
HGNC (Hugo) STX10
LocusID (NCBI) 8677
Atlas_Id 56499
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 13254872 and ends at 13261188 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STX10   11428
Cards
Entrez_Gene (NCBI)STX10  8677  syntaxin 10
AliasesSYN10; hsyn10
GeneCards (Weizmann)STX10
Ensembl hg19 (Hinxton)ENSG00000104915 [Gene_View]  chr19:13254872-13261188 [Contig_View]  STX10 [Vega]
Ensembl hg38 (Hinxton)ENSG00000104915 [Gene_View]  chr19:13254872-13261188 [Contig_View]  STX10 [Vega]
ICGC DataPortalENSG00000104915
TCGA cBioPortalSTX10
AceView (NCBI)STX10
Genatlas (Paris)STX10
WikiGenes8677
SOURCE (Princeton)STX10
Genetics Home Reference (NIH)STX10
Genomic and cartography
GoldenPath hg19 (UCSC)STX10  -     chr19:13254872-13261188 -  19p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)STX10  -     19p13.2   [Description]    (hg38-Dec_2013)
EnsemblSTX10 - 19p13.2 [CytoView hg19]  STX10 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBISTX10 [Mapview hg19]  STX10 [Mapview hg38]
OMIM603765   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001271609 NM_001271610 NM_001271611 NM_003765
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STX10
Cluster EST : UnigeneHs.43812 [ NCBI ]
CGAP (NCI)Hs.43812
Alternative Splicing GalleryENSG00000104915
Gene ExpressionSTX10 [ NCBI-GEO ]   STX10 [ EBI - ARRAY_EXPRESS ]   STX10 [ SEEK ]   STX10 [ MEM ]
Gene Expression Viewer (FireBrowse)STX10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8677
GTEX Portal (Tissue expression)STX10
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60499   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60499  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60499
Splice isoforms : SwissVarO60499
PhosPhoSitePlusO60499
Domaine pattern : Prosite (Expaxy)SYNTAXIN (PS00914)    T_SNARE (PS50192)   
Domains : Interpro (EBI)Syntaxin-6_N    Syntaxin/epimorphin_CS    t-SNARE    T_SNARE_dom   
Domain families : Pfam (Sanger)SNARE (PF05739)    Syntaxin-6_N (PF09177)   
Domain families : Pfam (NCBI)pfam05739    pfam09177   
Domain families : Smart (EMBL)t_SNARE (SM00397)  
Conserved Domain (NCBI)STX10
DMDM Disease mutations8677
Blocks (Seattle)STX10
PDB (SRS)4DND   
PDB (PDBSum)4DND   
PDB (IMB)4DND   
PDB (RSDB)4DND   
Structural Biology KnowledgeBase4DND   
SCOP (Structural Classification of Proteins)4DND   
CATH (Classification of proteins structures)4DND   
SuperfamilyO60499
Human Protein AtlasENSG00000104915
Peptide AtlasO60499
HPRD04791
IPIIPI00293402   IPI00178839   IPI00477418   
Protein Interaction databases
DIP (DOE-UCLA)O60499
IntAct (EBI)O60499
FunCoupENSG00000104915
BioGRIDSTX10
STRING (EMBL)STX10
ZODIACSTX10
Ontologies - Pathways
QuickGOO60499
Ontology : AmiGOSNAP receptor activity  protein binding  trans-Golgi network  cytosol  intracellular protein transport  vesicle fusion  integral component of membrane  syntaxin binding  SNARE complex  vesicle  trans-Golgi network membrane  regulation of protein localization  early endosome to Golgi transport  retrograde transport, endosome to Golgi  vesicle docking  perinuclear region of cytoplasm  
Ontology : EGO-EBISNAP receptor activity  protein binding  trans-Golgi network  cytosol  intracellular protein transport  vesicle fusion  integral component of membrane  syntaxin binding  SNARE complex  vesicle  trans-Golgi network membrane  regulation of protein localization  early endosome to Golgi transport  retrograde transport, endosome to Golgi  vesicle docking  perinuclear region of cytoplasm  
Pathways : KEGGSNARE interactions in vesicular transport   
NDEx NetworkSTX10
Atlas of Cancer Signalling NetworkSTX10
Wikipedia pathwaysSTX10
Orthology - Evolution
OrthoDB8677
GeneTree (enSembl)ENSG00000104915
Phylogenetic Trees/Animal Genes : TreeFamSTX10
HOVERGENO60499
HOGENOMO60499
Homologs : HomoloGeneSTX10
Homology/Alignments : Family Browser (UCSC)STX10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTX10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STX10
dbVarSTX10
ClinVarSTX10
1000_GenomesSTX10 
Exome Variant ServerSTX10
ExAC (Exome Aggregation Consortium)STX10 (select the gene name)
Genetic variants : HAPMAP8677
Genomic Variants (DGV)STX10 [DGVbeta]
DECIPHER (Syndromes)19:13254872-13261188  ENSG00000104915
CONAN: Copy Number AnalysisSTX10 
Mutations
ICGC Data PortalSTX10 
TCGA Data PortalSTX10 
Broad Tumor PortalSTX10
OASIS PortalSTX10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTX10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTX10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STX10
DgiDB (Drug Gene Interaction Database)STX10
DoCM (Curated mutations)STX10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STX10 (select a term)
intoGenSTX10
Cancer3DSTX10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603765   
Orphanet
MedgenSTX10
Genetic Testing Registry STX10
NextProtO60499 [Medical]
TSGene8677
GENETestsSTX10
Huge Navigator STX10 [HugePedia]
snp3D : Map Gene to Disease8677
BioCentury BCIQSTX10
ClinGenSTX10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8677
Chemical/Pharm GKB GenePA36228
Clinical trialSTX10
Miscellaneous
canSAR (ICR)STX10 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTX10
EVEXSTX10
GoPubMedSTX10
iHOPSTX10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:29:46 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.