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STX16-NPEPL1 (STX16-NPEPL1 readthrough (NMD candidate))

Identity

Other alias-
HGNC (Hugo) STX16-NPEPL1
LocusID (NCBI) 100534593
Atlas_Id 74333
Location 20q13.32  [Link to chromosome band 20q13]
Location_base_pair Starts at 58651253 and ends at 58715844 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STX16-NPEPL1   41993
Cards
Entrez_Gene (NCBI)STX16-NPEPL1  100534593  STX16-NPEPL1 readthrough (NMD candidate)
Aliases
GeneCards (Weizmann)STX16-NPEPL1
Ensembl hg19 (Hinxton)ENSG00000254995 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000254995 [Gene_View]  chr20:58651253-58715844 [Contig_View]  STX16-NPEPL1 [Vega]
ICGC DataPortalENSG00000254995
TCGA cBioPortalSTX16-NPEPL1
AceView (NCBI)STX16-NPEPL1
Genatlas (Paris)STX16-NPEPL1
WikiGenes100534593
SOURCE (Princeton)STX16-NPEPL1
Genetics Home Reference (NIH)STX16-NPEPL1
Genomic and cartography
GoldenPath hg38 (UCSC)STX16-NPEPL1  -     chr20:58651253-58715844 +  20q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STX16-NPEPL1  -     20q13.32   [Description]    (hg19-Feb_2009)
EnsemblSTX16-NPEPL1 - 20q13.32 [CytoView hg19]  STX16-NPEPL1 - 20q13.32 [CytoView hg38]
Mapping of homologs : NCBISTX16-NPEPL1 [Mapview hg19]  STX16-NPEPL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB209296
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STX16-NPEPL1
Cluster EST : UnigeneHs.654868 [ NCBI ]
CGAP (NCI)Hs.654868
Alternative Splicing GalleryENSG00000254995
Gene ExpressionSTX16-NPEPL1 [ NCBI-GEO ]   STX16-NPEPL1 [ EBI - ARRAY_EXPRESS ]   STX16-NPEPL1 [ SEEK ]   STX16-NPEPL1 [ MEM ]
Gene Expression Viewer (FireBrowse)STX16-NPEPL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100534593
GTEX Portal (Tissue expression)STX16-NPEPL1
Human Protein AtlasENSG00000254995-STX16-NPEPL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)STX16-NPEPL1
DMDM Disease mutations100534593
Blocks (Seattle)STX16-NPEPL1
Human Protein Atlas [tissue]ENSG00000254995-STX16-NPEPL1 [tissue]
IPIIPI00023149   IPI00220261   IPI00414290   IPI00220263   IPI00744349   IPI00798248   IPI00746941   IPI00981423   IPI00386859   IPI00514263   IPI00556430   IPI00748594   IPI00795006   IPI00795939   IPI00794054   IPI00794656   IPI00744456   IPI00977307   IPI01009999   IPI00976174   IPI00983303   IPI01011646   
Protein Interaction databases
FunCoupENSG00000254995
BioGRIDSTX16-NPEPL1
STRING (EMBL)STX16-NPEPL1
ZODIACSTX16-NPEPL1
Ontologies - Pathways
Huge Navigator STX16-NPEPL1 [HugePedia]
snp3D : Map Gene to Disease100534593
BioCentury BCIQSTX16-NPEPL1
ClinGenSTX16-NPEPL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100534593
Clinical trialSTX16-NPEPL1
Miscellaneous
canSAR (ICR)STX16-NPEPL1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTX16-NPEPL1
EVEXSTX16-NPEPL1
GoPubMedSTX16-NPEPL1
iHOPSTX16-NPEPL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:42:20 CET 2017

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