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STX16 (syntaxin 16)

Identity

Alias_symbol (synonym)hsyn16
SYN16
Other alias
HGNC (Hugo) STX16
LocusID (NCBI) 8675
Atlas_Id 54674
Location 20q13.32  [Link to chromosome band 20q13]
Location_base_pair Starts at 58651253 and ends at 58679526 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARMC10 (7q22.1) / STX16 (20q13.32)CNN1 (19p13.2) / STX16 (20q13.32)HPS6 (10q24.32) / STX16 (20q13.32)
STX16 (20q13.32) / MYT1 (20q13.33)STX16 (20q13.32) / NCOA5 (20q13.12)STX16 (20q13.32) / NEDD4L (18q21.31)
STX16 (20q13.32) / RAE1 (20q13.31)STX16 (20q13.32) / RNF208 (9q34.3)STX16 20q13.32 / MYT1 20q13.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STX16   11431
Cards
Entrez_Gene (NCBI)STX16  8675  syntaxin 16
AliasesSYN16
GeneCards (Weizmann)STX16
Ensembl hg19 (Hinxton)ENSG00000124222 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124222 [Gene_View]  chr20:58651253-58679526 [Contig_View]  STX16 [Vega]
ICGC DataPortalENSG00000124222
TCGA cBioPortalSTX16
AceView (NCBI)STX16
Genatlas (Paris)STX16
WikiGenes8675
SOURCE (Princeton)STX16
Genetics Home Reference (NIH)STX16
Genomic and cartography
GoldenPath hg38 (UCSC)STX16  -     chr20:58651253-58679526 +  20q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STX16  -     20q13.32   [Description]    (hg19-Feb_2009)
EnsemblSTX16 - 20q13.32 [CytoView hg19]  STX16 - 20q13.32 [CytoView hg38]
Mapping of homologs : NCBISTX16 [Mapview hg19]  STX16 [Mapview hg38]
OMIM603233   603666   
Gene and transcription
Genbank (Entrez)AA256337 AF008935 AF008936 AF008937 AF038897
RefSeq transcript (Entrez)NM_001001433 NM_001001434 NM_001134772 NM_001134773 NM_001204868 NM_003763
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STX16
Cluster EST : UnigeneHs.307913 [ NCBI ]
CGAP (NCI)Hs.307913
Alternative Splicing GalleryENSG00000124222
Gene ExpressionSTX16 [ NCBI-GEO ]   STX16 [ EBI - ARRAY_EXPRESS ]   STX16 [ SEEK ]   STX16 [ MEM ]
Gene Expression Viewer (FireBrowse)STX16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8675
GTEX Portal (Tissue expression)STX16
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14662   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14662  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14662
Splice isoforms : SwissVarO14662
PhosPhoSitePlusO14662
Domaine pattern : Prosite (Expaxy)SYNTAXIN (PS00914)    T_SNARE (PS50192)   
Domains : Interpro (EBI)SNARE    STX16    Syntaxin/epimorphin_CS    Syntaxin_N    T_SNARE_dom   
Domain families : Pfam (Sanger)SNARE (PF05739)    Syntaxin (PF00804)   
Domain families : Pfam (NCBI)pfam05739    pfam00804   
Domain families : Smart (EMBL)t_SNARE (SM00397)  
Conserved Domain (NCBI)STX16
DMDM Disease mutations8675
Blocks (Seattle)STX16
SuperfamilyO14662
Human Protein AtlasENSG00000124222
Peptide AtlasO14662
HPRD04718
Protein Interaction databases
DIP (DOE-UCLA)O14662
IntAct (EBI)O14662
FunCoupENSG00000124222
BioGRIDSTX16
STRING (EMBL)STX16
ZODIACSTX16
Ontologies - Pathways
QuickGOO14662
Ontology : AmiGOGolgi membrane  SNAP receptor activity  protein binding  cytoplasm  Golgi apparatus  trans-Golgi network  cytosol  focal adhesion  intracellular protein transport  vesicle fusion  integral component of membrane  syntaxin binding  SNARE complex  SNARE complex  Golgi cisterna  trans-Golgi network membrane  retrograde transport, endosome to Golgi  retrograde transport, endosome to Golgi  intracellular membrane-bounded organelle  vesicle docking  perinuclear region of cytoplasm  Golgi ribbon formation  
Ontology : EGO-EBIGolgi membrane  SNAP receptor activity  protein binding  cytoplasm  Golgi apparatus  trans-Golgi network  cytosol  focal adhesion  intracellular protein transport  vesicle fusion  integral component of membrane  syntaxin binding  SNARE complex  SNARE complex  Golgi cisterna  trans-Golgi network membrane  retrograde transport, endosome to Golgi  retrograde transport, endosome to Golgi  intracellular membrane-bounded organelle  vesicle docking  perinuclear region of cytoplasm  Golgi ribbon formation  
Pathways : KEGGSNARE interactions in vesicular transport   
NDEx NetworkSTX16
Atlas of Cancer Signalling NetworkSTX16
Wikipedia pathwaysSTX16
Orthology - Evolution
OrthoDB8675
GeneTree (enSembl)ENSG00000124222
Phylogenetic Trees/Animal Genes : TreeFamSTX16
HOVERGENO14662
HOGENOMO14662
Homologs : HomoloGeneSTX16
Homology/Alignments : Family Browser (UCSC)STX16
Gene fusions - Rearrangements
Fusion : MitelmanSTX16/MYT1 [20q13.32/20q13.33]  
Fusion : MitelmanSTX16/NCOA5 [20q13.32/20q13.12]  [t(20;20)(q13;q13)]  
Fusion : MitelmanSTX16/RAE1 [20q13.32/20q13.31]  [t(20;20)(q13;q13)]  
Fusion: TCGASTX16 20q13.32 MYT1 20q13.33 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTX16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STX16
dbVarSTX16
ClinVarSTX16
1000_GenomesSTX16 
Exome Variant ServerSTX16
ExAC (Exome Aggregation Consortium)STX16 (select the gene name)
Genetic variants : HAPMAP8675
Genomic Variants (DGV)STX16 [DGVbeta]
DECIPHERSTX16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTX16 
Mutations
ICGC Data PortalSTX16 
TCGA Data PortalSTX16 
Broad Tumor PortalSTX16
OASIS PortalSTX16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTX16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTX16
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STX16
DgiDB (Drug Gene Interaction Database)STX16
DoCM (Curated mutations)STX16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STX16 (select a term)
intoGenSTX16
Cancer3DSTX16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603233    603666   
Orphanet12558   
MedgenSTX16
Genetic Testing Registry STX16
NextProtO14662 [Medical]
TSGene8675
GENETestsSTX16
Target ValidationSTX16
Huge Navigator STX16 [HugePedia]
snp3D : Map Gene to Disease8675
BioCentury BCIQSTX16
ClinGenSTX16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8675
Chemical/Pharm GKB GenePA36231
Clinical trialSTX16
Miscellaneous
canSAR (ICR)STX16 (select the gene name)
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTX16
EVEXSTX16
GoPubMedSTX16
iHOPSTX16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:16:03 CEST 2017

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