Atlas of Genetics and Cytogenetics in Oncology and Haematology


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STX17 (syntaxin 17)

Identity

Alias_symbol (synonym)FLJ20651
Other alias-
HGNC (Hugo) STX17
LocusID (NCBI) 55014
Atlas_Id 50884
Location 9q31.1  [Link to chromosome band 9q31]
Location_base_pair Starts at 102668915 and ends at 102736818 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RMI1 (9q21.32) / STX17 (9q31.1)STX17 (9q31.1) / BIRC5 (17q25.3)STX17 (9q31.1) / INVS (9q31.1)
STX17 (9q31.1) / NR4A3 (9q22.33)RMI1 9q21.32 / STX17 9q31.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STX17   11432
Cards
Entrez_Gene (NCBI)STX17  55014  syntaxin 17
Aliases
GeneCards (Weizmann)STX17
Ensembl hg19 (Hinxton)ENSG00000136874 [Gene_View]  chr9:102668915-102736818 [Contig_View]  STX17 [Vega]
Ensembl hg38 (Hinxton)ENSG00000136874 [Gene_View]  chr9:102668915-102736818 [Contig_View]  STX17 [Vega]
ICGC DataPortalENSG00000136874
TCGA cBioPortalSTX17
AceView (NCBI)STX17
Genatlas (Paris)STX17
WikiGenes55014
SOURCE (Princeton)STX17
Genetics Home Reference (NIH)STX17
Genomic and cartography
GoldenPath hg19 (UCSC)STX17  -     chr9:102668915-102736818 +  9q31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)STX17  -     9q31.1   [Description]    (hg38-Dec_2013)
EnsemblSTX17 - 9q31.1 [CytoView hg19]  STX17 - 9q31.1 [CytoView hg38]
Mapping of homologs : NCBISTX17 [Mapview hg19]  STX17 [Mapview hg38]
OMIM604204   
Gene and transcription
Genbank (Entrez)AI375996 AK000658 AK095262 AK124662 AK295949
RefSeq transcript (Entrez)NM_017919
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)STX17
Cluster EST : UnigeneHs.704031 [ NCBI ]
CGAP (NCI)Hs.704031
Alternative Splicing GalleryENSG00000136874
Gene ExpressionSTX17 [ NCBI-GEO ]   STX17 [ EBI - ARRAY_EXPRESS ]   STX17 [ SEEK ]   STX17 [ MEM ]
Gene Expression Viewer (FireBrowse)STX17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55014
GTEX Portal (Tissue expression)STX17
Protein : pattern, domain, 3D structure
UniProt/SwissProtP56962   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP56962  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP56962
Splice isoforms : SwissVarP56962
PhosPhoSitePlusP56962
Domaine pattern : Prosite (Expaxy)SYNTAXIN (PS00914)    T_SNARE (PS50192)   
Domains : Interpro (EBI)STX17    Syntaxin/epimorphin_CS    t-SNARE    T_SNARE_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)t_SNARE (SM00397)  
Conserved Domain (NCBI)STX17
DMDM Disease mutations55014
Blocks (Seattle)STX17
PDB (SRS)4WY4   
PDB (PDBSum)4WY4   
PDB (IMB)4WY4   
PDB (RSDB)4WY4   
Structural Biology KnowledgeBase4WY4   
SCOP (Structural Classification of Proteins)4WY4   
CATH (Classification of proteins structures)4WY4   
SuperfamilyP56962
Human Protein AtlasENSG00000136874
Peptide AtlasP56962
HPRD05013
IPIIPI00012028   IPI00977687   IPI00977121   IPI00975703   IPI00983552   
Protein Interaction databases
DIP (DOE-UCLA)P56962
IntAct (EBI)P56962
FunCoupENSG00000136874
BioGRIDSTX17
STRING (EMBL)STX17
ZODIACSTX17
Ontologies - Pathways
QuickGOP56962
Ontology : AmiGOSNARE binding  autophagosome membrane  SNAP receptor activity  protein binding  mitochondrion  mitochondrion  lysosomal membrane  endoplasmic reticulum membrane  rough endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment  cytosol  intracellular protein transport  ER to Golgi vesicle-mediated transport  vesicle fusion  Golgi organization  ER to Golgi transport vesicle membrane  integral component of membrane  protein kinase binding  protein phosphatase binding  ER to Golgi transport vesicle  smooth endoplasmic reticulum membrane  HOPS complex  SNARE complex  endoplasmic reticulum-Golgi intermediate compartment membrane  protein localization to pre-autophagosomal structure  ER-mitochondrion membrane contact site  vesicle docking  endoplasmic reticulum-Golgi intermediate compartment organization  autophagosome maturation  
Ontology : EGO-EBISNARE binding  autophagosome membrane  SNAP receptor activity  protein binding  mitochondrion  mitochondrion  lysosomal membrane  endoplasmic reticulum membrane  rough endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment  cytosol  intracellular protein transport  ER to Golgi vesicle-mediated transport  vesicle fusion  Golgi organization  ER to Golgi transport vesicle membrane  integral component of membrane  protein kinase binding  protein phosphatase binding  ER to Golgi transport vesicle  smooth endoplasmic reticulum membrane  HOPS complex  SNARE complex  endoplasmic reticulum-Golgi intermediate compartment membrane  protein localization to pre-autophagosomal structure  ER-mitochondrion membrane contact site  vesicle docking  endoplasmic reticulum-Golgi intermediate compartment organization  autophagosome maturation  
Pathways : KEGGSNARE interactions in vesicular transport   
NDEx NetworkSTX17
Atlas of Cancer Signalling NetworkSTX17
Wikipedia pathwaysSTX17
Orthology - Evolution
OrthoDB55014
GeneTree (enSembl)ENSG00000136874
Phylogenetic Trees/Animal Genes : TreeFamSTX17
HOVERGENP56962
HOGENOMP56962
Homologs : HomoloGeneSTX17
Homology/Alignments : Family Browser (UCSC)STX17
Gene fusions - Rearrangements
Fusion : MitelmanRMI1/STX17 [9q21.32/9q31.1]  [t(9;9)(q21;q31)]  
Fusion: TCGARMI1 9q21.32 STX17 9q31.1 GBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTX17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STX17
dbVarSTX17
ClinVarSTX17
1000_GenomesSTX17 
Exome Variant ServerSTX17
ExAC (Exome Aggregation Consortium)STX17 (select the gene name)
Genetic variants : HAPMAP55014
Genomic Variants (DGV)STX17 [DGVbeta]
DECIPHER (Syndromes)9:102668915-102736818  ENSG00000136874
CONAN: Copy Number AnalysisSTX17 
Mutations
ICGC Data PortalSTX17 
TCGA Data PortalSTX17 
Broad Tumor PortalSTX17
OASIS PortalSTX17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTX17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTX17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STX17
DgiDB (Drug Gene Interaction Database)STX17
DoCM (Curated mutations)STX17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STX17 (select a term)
intoGenSTX17
Cancer3DSTX17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604204   
Orphanet
MedgenSTX17
Genetic Testing Registry STX17
NextProtP56962 [Medical]
TSGene55014
GENETestsSTX17
Huge Navigator STX17 [HugePedia]
snp3D : Map Gene to Disease55014
BioCentury BCIQSTX17
ClinGenSTX17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55014
Chemical/Pharm GKB GenePA36232
Clinical trialSTX17
Miscellaneous
canSAR (ICR)STX17 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTX17
EVEXSTX17
GoPubMedSTX17
iHOPSTX17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:29:47 CET 2017

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