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STX18 (syntaxin 18)

Identity

Alias (NCBI)Ufe1
HGNC (Hugo) STX18
HGNC Alias symbUfe1
LocusID (NCBI) 53407
Atlas_Id 51029
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 4418969 and ends at 4542048 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PRMT2 (21q22.3) / STX18 (4p16.3)PRMT2 21q22.3 / STX18 4p16.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)STX18   15942
Cards
Entrez_Gene (NCBI)STX18    syntaxin 18
AliasesUfe1
GeneCards (Weizmann)STX18
Ensembl hg19 (Hinxton)ENSG00000168818 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168818 [Gene_View]  ENSG00000168818 [Sequence]  chr4:4418969-4542048 [Contig_View]  STX18 [Vega]
ICGC DataPortalENSG00000168818
TCGA cBioPortalSTX18
AceView (NCBI)STX18
Genatlas (Paris)STX18
SOURCE (Princeton)STX18
Genetics Home Reference (NIH)STX18
Genomic and cartography
GoldenPath hg38 (UCSC)STX18  -     chr4:4418969-4542048 -  4p16.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STX18  -     4p16.3   [Description]    (hg19-Feb_2009)
GoldenPathSTX18 - 4p16.3 [CytoView hg19]  STX18 - 4p16.3 [CytoView hg38]
ImmunoBaseENSG00000168818
Genome Data Viewer NCBISTX18 [Mapview hg19]  
OMIM606046   
Gene and transcription
Genbank (Entrez)AB028741 AK310026 AL832867 AW953241 AY453396
RefSeq transcript (Entrez)NM_001346281 NM_001346282 NM_001346300 NM_016930
Consensus coding sequences : CCDS (NCBI)STX18
Gene ExpressionSTX18 [ NCBI-GEO ]   STX18 [ EBI - ARRAY_EXPRESS ]   STX18 [ SEEK ]   STX18 [ MEM ]
Gene Expression Viewer (FireBrowse)STX18 [ Firebrowse - Broad ]
GenevisibleExpression of STX18 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)53407
GTEX Portal (Tissue expression)STX18
Human Protein AtlasENSG00000168818-STX18 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2W9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2W9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2W9
PhosPhoSitePlusQ9P2W9
Domaine pattern : Prosite (Expaxy)SYNTAXIN (PS00914)   
Domains : Interpro (EBI)Syntaxin-18_N    Syntaxin/epimorphin_CS   
Domain families : Pfam (Sanger)Syntaxin-18_N (PF10496)   
Domain families : Pfam (NCBI)pfam10496   
Conserved Domain (NCBI)STX18
SuperfamilyQ9P2W9
AlphaFold pdb e-kbQ9P2W9   
Human Protein Atlas [tissue]ENSG00000168818-STX18 [tissue]
HPRD06923
Protein Interaction databases
DIP (DOE-UCLA)Q9P2W9
IntAct (EBI)Q9P2W9
BioGRIDSTX18
STRING (EMBL)STX18
ZODIACSTX18
Ontologies - Pathways
QuickGOQ9P2W9
Ontology : AmiGOGolgi membrane  SNAP receptor activity  protein binding  endoplasmic reticulum  endoplasmic reticulum  endoplasmic reticulum membrane  intracellular protein transport  retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum  retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum  integral component of membrane  protein domain specific binding  SNARE complex  membrane fusion  endoplasmic reticulum membrane organization  positive regulation of organelle assembly  positive regulation of ER to Golgi vesicle-mediated transport  regulation of Golgi organization  
Ontology : EGO-EBIGolgi membrane  SNAP receptor activity  protein binding  endoplasmic reticulum  endoplasmic reticulum  endoplasmic reticulum membrane  intracellular protein transport  retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum  retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum  integral component of membrane  protein domain specific binding  SNARE complex  membrane fusion  endoplasmic reticulum membrane organization  positive regulation of organelle assembly  positive regulation of ER to Golgi vesicle-mediated transport  regulation of Golgi organization  
Pathways : KEGGSNARE interactions in vesicular transport    Phagosome   
NDEx NetworkSTX18
Atlas of Cancer Signalling NetworkSTX18
Wikipedia pathwaysSTX18
Orthology - Evolution
OrthoDB53407
GeneTree (enSembl)ENSG00000168818
Phylogenetic Trees/Animal Genes : TreeFamSTX18
Homologs : HomoloGeneSTX18
Homology/Alignments : Family Browser (UCSC)STX18
Gene fusions - Rearrangements
Fusion : MitelmanPRMT2/STX18 [21q22.3/4p16.3]  
Fusion : QuiverSTX18
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTX18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STX18
dbVarSTX18
ClinVarSTX18
MonarchSTX18
1000_GenomesSTX18 
Exome Variant ServerSTX18
GNOMAD BrowserENSG00000168818
Varsome BrowserSTX18
ACMGSTX18 variants
VarityQ9P2W9
Genomic Variants (DGV)STX18 [DGVbeta]
DECIPHERSTX18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTX18 
Mutations
ICGC Data PortalSTX18 
TCGA Data PortalSTX18 
Broad Tumor PortalSTX18
OASIS PortalSTX18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTX18  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSTX18
Mutations and Diseases : HGMDSTX18
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSTX18
DgiDB (Drug Gene Interaction Database)STX18
DoCM (Curated mutations)STX18
CIViC (Clinical Interpretations of Variants in Cancer)STX18
Cancer3DSTX18
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606046   
Orphanet
DisGeNETSTX18
MedgenSTX18
Genetic Testing Registry STX18
NextProtQ9P2W9 [Medical]
GENETestsSTX18
Target ValidationSTX18
Huge Navigator STX18 [HugePedia]
ClinGenSTX18
Clinical trials, drugs, therapy
MyCancerGenomeSTX18
Protein Interactions : CTDSTX18
Pharm GKB GenePA38061
Pharm GKB PathwaysPA162355621   
PharosQ9P2W9
Clinical trialSTX18
Miscellaneous
canSAR (ICR)STX18
HarmonizomeSTX18
DataMed IndexSTX18
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSTX18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:33:44 CEST 2021

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