Atlas of Genetics and Cytogenetics in Oncology and Haematology


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STX18 (syntaxin 18)

Identity

Alias_symbol (synonym)Ufe1
Other alias
HGNC (Hugo) STX18
LocusID (NCBI) 53407
Atlas_Id 51029
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 4418969 and ends at 4542066 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PRMT2 (21q22.3) / STX18 (4p16.3)PRMT2 21q22.3 / STX18 4p16.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STX18   15942
Cards
Entrez_Gene (NCBI)STX18  53407  syntaxin 18
AliasesUfe1
GeneCards (Weizmann)STX18
Ensembl hg19 (Hinxton)ENSG00000168818 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168818 [Gene_View]  chr4:4418969-4542066 [Contig_View]  STX18 [Vega]
ICGC DataPortalENSG00000168818
TCGA cBioPortalSTX18
AceView (NCBI)STX18
Genatlas (Paris)STX18
WikiGenes53407
SOURCE (Princeton)STX18
Genetics Home Reference (NIH)STX18
Genomic and cartography
GoldenPath hg38 (UCSC)STX18  -     chr4:4418969-4542066 -  4p16.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STX18  -     4p16.3   [Description]    (hg19-Feb_2009)
EnsemblSTX18 - 4p16.3 [CytoView hg19]  STX18 - 4p16.3 [CytoView hg38]
Mapping of homologs : NCBISTX18 [Mapview hg19]  STX18 [Mapview hg38]
OMIM606046   
Gene and transcription
Genbank (Entrez)AB028741 AK310026 AL832867 AW953241 AY453396
RefSeq transcript (Entrez)NM_001346281 NM_001346282 NM_001346300 NM_016930
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STX18
Cluster EST : UnigeneHs.584913 [ NCBI ]
CGAP (NCI)Hs.584913
Alternative Splicing GalleryENSG00000168818
Gene ExpressionSTX18 [ NCBI-GEO ]   STX18 [ EBI - ARRAY_EXPRESS ]   STX18 [ SEEK ]   STX18 [ MEM ]
Gene Expression Viewer (FireBrowse)STX18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)53407
GTEX Portal (Tissue expression)STX18
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2W9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2W9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2W9
Splice isoforms : SwissVarQ9P2W9
PhosPhoSitePlusQ9P2W9
Domaine pattern : Prosite (Expaxy)SYNTAXIN (PS00914)   
Domains : Interpro (EBI)Syntaxin-18_N    Syntaxin/epimorphin_CS   
Domain families : Pfam (Sanger)Syntaxin-18_N (PF10496)   
Domain families : Pfam (NCBI)pfam10496   
Conserved Domain (NCBI)STX18
DMDM Disease mutations53407
Blocks (Seattle)STX18
SuperfamilyQ9P2W9
Human Protein AtlasENSG00000168818
Peptide AtlasQ9P2W9
HPRD06923
IPIIPI00027194   IPI00964793   IPI00964107   IPI00965056   IPI00964517   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2W9
IntAct (EBI)Q9P2W9
FunCoupENSG00000168818
BioGRIDSTX18
STRING (EMBL)STX18
ZODIACSTX18
Ontologies - Pathways
QuickGOQ9P2W9
Ontology : AmiGOGolgi membrane  SNAP receptor activity  protein binding  endoplasmic reticulum  endoplasmic reticulum membrane  intracellular protein transport  retrograde vesicle-mediated transport, Golgi to ER  retrograde vesicle-mediated transport, Golgi to ER  integral component of membrane  protein domain specific binding  SNARE complex  membrane fusion  endoplasmic reticulum membrane organization  positive regulation of organelle assembly  positive regulation of ER to Golgi vesicle-mediated transport  regulation of Golgi organization  
Ontology : EGO-EBIGolgi membrane  SNAP receptor activity  protein binding  endoplasmic reticulum  endoplasmic reticulum membrane  intracellular protein transport  retrograde vesicle-mediated transport, Golgi to ER  retrograde vesicle-mediated transport, Golgi to ER  integral component of membrane  protein domain specific binding  SNARE complex  membrane fusion  endoplasmic reticulum membrane organization  positive regulation of organelle assembly  positive regulation of ER to Golgi vesicle-mediated transport  regulation of Golgi organization  
Pathways : KEGGSNARE interactions in vesicular transport    Phagosome   
NDEx NetworkSTX18
Atlas of Cancer Signalling NetworkSTX18
Wikipedia pathwaysSTX18
Orthology - Evolution
OrthoDB53407
GeneTree (enSembl)ENSG00000168818
Phylogenetic Trees/Animal Genes : TreeFamSTX18
HOVERGENQ9P2W9
HOGENOMQ9P2W9
Homologs : HomoloGeneSTX18
Homology/Alignments : Family Browser (UCSC)STX18
Gene fusions - Rearrangements
Fusion : MitelmanPRMT2/STX18 [21q22.3/4p16.3]  [t(4;21)(p16;q22)]  
Fusion: TCGAPRMT2 21q22.3 STX18 4p16.3 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTX18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STX18
dbVarSTX18
ClinVarSTX18
1000_GenomesSTX18 
Exome Variant ServerSTX18
ExAC (Exome Aggregation Consortium)STX18 (select the gene name)
Genetic variants : HAPMAP53407
Genomic Variants (DGV)STX18 [DGVbeta]
DECIPHERSTX18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTX18 
Mutations
ICGC Data PortalSTX18 
TCGA Data PortalSTX18 
Broad Tumor PortalSTX18
OASIS PortalSTX18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTX18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTX18
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch STX18
DgiDB (Drug Gene Interaction Database)STX18
DoCM (Curated mutations)STX18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STX18 (select a term)
intoGenSTX18
Cancer3DSTX18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606046   
Orphanet
MedgenSTX18
Genetic Testing Registry STX18
NextProtQ9P2W9 [Medical]
TSGene53407
GENETestsSTX18
Target ValidationSTX18
Huge Navigator STX18 [HugePedia]
snp3D : Map Gene to Disease53407
BioCentury BCIQSTX18
ClinGenSTX18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD53407
Chemical/Pharm GKB GenePA38061
Clinical trialSTX18
Miscellaneous
canSAR (ICR)STX18 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTX18
EVEXSTX18
GoPubMedSTX18
iHOPSTX18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:58:02 CEST 2017

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