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STX19 (syntaxin 19)

Identity

Alias_symbol (synonym)MGC21382
Other alias-
HGNC (Hugo) STX19
LocusID (NCBI) 415117
Atlas_Id 56109
Location 3q11.2  [Link to chromosome band 3q11]
Location_base_pair Starts at 94014371 and ends at 94028610 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STX19   19300
Cards
Entrez_Gene (NCBI)STX19  415117  syntaxin 19
Aliases
GeneCards (Weizmann)STX19
Ensembl hg19 (Hinxton)ENSG00000178750 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178750 [Gene_View]  chr3:94014371-94028610 [Contig_View]  STX19 [Vega]
ICGC DataPortalENSG00000178750
TCGA cBioPortalSTX19
AceView (NCBI)STX19
Genatlas (Paris)STX19
WikiGenes415117
SOURCE (Princeton)STX19
Genetics Home Reference (NIH)STX19
Genomic and cartography
GoldenPath hg38 (UCSC)STX19  -     chr3:94014371-94028610 -  3q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STX19  -     3q11.2   [Description]    (hg19-Feb_2009)
EnsemblSTX19 - 3q11.2 [CytoView hg19]  STX19 - 3q11.2 [CytoView hg38]
Mapping of homologs : NCBISTX19 [Mapview hg19]  STX19 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF461456 BC034696
RefSeq transcript (Entrez)NM_001001850
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STX19
Cluster EST : UnigeneHs.679768 [ NCBI ]
CGAP (NCI)Hs.679768
Alternative Splicing GalleryENSG00000178750
Gene ExpressionSTX19 [ NCBI-GEO ]   STX19 [ EBI - ARRAY_EXPRESS ]   STX19 [ SEEK ]   STX19 [ MEM ]
Gene Expression Viewer (FireBrowse)STX19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)415117
GTEX Portal (Tissue expression)STX19
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4C7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4C7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4C7
Splice isoforms : SwissVarQ8N4C7
PhosPhoSitePlusQ8N4C7
Domaine pattern : Prosite (Expaxy)SYNTAXIN (PS00914)    T_SNARE (PS50192)   
Domains : Interpro (EBI)SNARE    STX19    Syntaxin/epimorphin_CS    Syntaxin_N    T_SNARE_dom   
Domain families : Pfam (Sanger)Syntaxin (PF00804)   
Domain families : Pfam (NCBI)pfam00804   
Domain families : Smart (EMBL)t_SNARE (SM00397)  
Conserved Domain (NCBI)STX19
DMDM Disease mutations415117
Blocks (Seattle)STX19
SuperfamilyQ8N4C7
Human Protein AtlasENSG00000178750
Peptide AtlasQ8N4C7
HPRD14477
IPIIPI00166679   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4C7
IntAct (EBI)Q8N4C7
FunCoupENSG00000178750
BioGRIDSTX19
STRING (EMBL)STX19
ZODIACSTX19
Ontologies - Pathways
QuickGOQ8N4C7
Ontology : AmiGOSNARE binding  SNAP receptor activity  protein binding  plasma membrane  intracellular protein transport  synaptic vesicle  integral component of membrane  SNARE complex  synaptic vesicle fusion to presynaptic active zone membrane  vesicle docking  
Ontology : EGO-EBISNARE binding  SNAP receptor activity  protein binding  plasma membrane  intracellular protein transport  synaptic vesicle  integral component of membrane  SNARE complex  synaptic vesicle fusion to presynaptic active zone membrane  vesicle docking  
Pathways : KEGGSNARE interactions in vesicular transport   
NDEx NetworkSTX19
Atlas of Cancer Signalling NetworkSTX19
Wikipedia pathwaysSTX19
Orthology - Evolution
OrthoDB415117
GeneTree (enSembl)ENSG00000178750
Phylogenetic Trees/Animal Genes : TreeFamSTX19
HOVERGENQ8N4C7
HOGENOMQ8N4C7
Homologs : HomoloGeneSTX19
Homology/Alignments : Family Browser (UCSC)STX19
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTX19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STX19
dbVarSTX19
ClinVarSTX19
1000_GenomesSTX19 
Exome Variant ServerSTX19
ExAC (Exome Aggregation Consortium)STX19 (select the gene name)
Genetic variants : HAPMAP415117
Genomic Variants (DGV)STX19 [DGVbeta]
DECIPHERSTX19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTX19 
Mutations
ICGC Data PortalSTX19 
TCGA Data PortalSTX19 
Broad Tumor PortalSTX19
OASIS PortalSTX19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTX19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTX19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STX19
DgiDB (Drug Gene Interaction Database)STX19
DoCM (Curated mutations)STX19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STX19 (select a term)
intoGenSTX19
Cancer3DSTX19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSTX19
Genetic Testing Registry STX19
NextProtQ8N4C7 [Medical]
TSGene415117
GENETestsSTX19
Target ValidationSTX19
Huge Navigator STX19 [HugePedia]
snp3D : Map Gene to Disease415117
BioCentury BCIQSTX19
ClinGenSTX19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD415117
Chemical/Pharm GKB GenePA142670857
Clinical trialSTX19
Miscellaneous
canSAR (ICR)STX19 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTX19
EVEXSTX19
GoPubMedSTX19
iHOPSTX19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:16:04 CEST 2017

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