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SUB1 (SUB1 homolog, transcriptional regulator)

Identity

Alias_namesSUB1 homolog (S. cerevisiae)
Alias_symbol (synonym)PC4
p15
p14
Other aliasP15
HGNC (Hugo) SUB1
LocusID (NCBI) 10923
Atlas_Id 52643
Location 5p13.3  [Link to chromosome band 5p13]
Location_base_pair Starts at 32585605 and ends at 32604185 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SCARB1 (12q24.31) / SUB1 (5p13.3)SUB1 (5p13.3) / HNRNPA2B1 (7p15.2)SUB1 (5p13.3) / PDHA1 (Xp22.12)
SCARB1 12q24.31 / SUB1 5p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SUB1   19985
Cards
Entrez_Gene (NCBI)SUB1  10923  SUB1 homolog, transcriptional regulator
AliasesP15; PC4; p14
GeneCards (Weizmann)SUB1
Ensembl hg19 (Hinxton)ENSG00000113387 [Gene_View]  chr5:32585605-32604185 [Contig_View]  SUB1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000113387 [Gene_View]  chr5:32585605-32604185 [Contig_View]  SUB1 [Vega]
ICGC DataPortalENSG00000113387
TCGA cBioPortalSUB1
AceView (NCBI)SUB1
Genatlas (Paris)SUB1
WikiGenes10923
SOURCE (Princeton)SUB1
Genetics Home Reference (NIH)SUB1
Genomic and cartography
GoldenPath hg19 (UCSC)SUB1  -     chr5:32585605-32604185 +  5p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SUB1  -     5p13.3   [Description]    (hg38-Dec_2013)
EnsemblSUB1 - 5p13.3 [CytoView hg19]  SUB1 - 5p13.3 [CytoView hg38]
Mapping of homologs : NCBISUB1 [Mapview hg19]  SUB1 [Mapview hg38]
OMIM600503   
Gene and transcription
Genbank (Entrez)AB209285 AK294124 AK307268 AK311754 BC009610
RefSeq transcript (Entrez)NM_006713
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_006576 NW_004929321
Consensus coding sequences : CCDS (NCBI)SUB1
Cluster EST : UnigeneHs.229641 [ NCBI ]
CGAP (NCI)Hs.229641
Alternative Splicing GalleryENSG00000113387
Gene ExpressionSUB1 [ NCBI-GEO ]   SUB1 [ EBI - ARRAY_EXPRESS ]   SUB1 [ SEEK ]   SUB1 [ MEM ]
Gene Expression Viewer (FireBrowse)SUB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10923
GTEX Portal (Tissue expression)SUB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP53999   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP53999  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP53999
Splice isoforms : SwissVarP53999
PhosPhoSitePlusP53999
Domains : Interpro (EBI)PC4    ssDNA-bd_transcriptional_reg   
Domain families : Pfam (Sanger)PC4 (PF02229)   
Domain families : Pfam (NCBI)pfam02229   
Conserved Domain (NCBI)SUB1
DMDM Disease mutations10923
Blocks (Seattle)SUB1
PDB (SRS)1PCF    2C62    2PHE    4USG   
PDB (PDBSum)1PCF    2C62    2PHE    4USG   
PDB (IMB)1PCF    2C62    2PHE    4USG   
PDB (RSDB)1PCF    2C62    2PHE    4USG   
Structural Biology KnowledgeBase1PCF    2C62    2PHE    4USG   
SCOP (Structural Classification of Proteins)1PCF    2C62    2PHE    4USG   
CATH (Classification of proteins structures)1PCF    2C62    2PHE    4USG   
SuperfamilyP53999
Human Protein AtlasENSG00000113387
Peptide AtlasP53999
HPRD02737
IPIIPI00221222   IPI00964232   IPI00930562   IPI00963960   
Protein Interaction databases
DIP (DOE-UCLA)P53999
IntAct (EBI)P53999
FunCoupENSG00000113387
BioGRIDSUB1
STRING (EMBL)SUB1
ZODIACSUB1
Ontologies - Pathways
QuickGOP53999
Ontology : AmiGOtranscriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding  single-stranded DNA binding  transcription coactivator activity  protein binding  nucleus  transcription factor complex  nucleolus  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  poly(A) RNA binding  positive regulation of transcription from RNA polymerase II promoter  SMAD protein signal transduction  extracellular exosome  
Ontology : EGO-EBItranscriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding  single-stranded DNA binding  transcription coactivator activity  protein binding  nucleus  transcription factor complex  nucleolus  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  poly(A) RNA binding  positive regulation of transcription from RNA polymerase II promoter  SMAD protein signal transduction  extracellular exosome  
NDEx NetworkSUB1
Atlas of Cancer Signalling NetworkSUB1
Wikipedia pathwaysSUB1
Orthology - Evolution
OrthoDB10923
GeneTree (enSembl)ENSG00000113387
Phylogenetic Trees/Animal Genes : TreeFamSUB1
HOVERGENP53999
HOGENOMP53999
Homologs : HomoloGeneSUB1
Homology/Alignments : Family Browser (UCSC)SUB1
Gene fusions - Rearrangements
Fusion : MitelmanSCARB1/SUB1 [12q24.31/5p13.3]  [t(5;12)(p13;q24)]  
Fusion: TCGASCARB1 12q24.31 SUB1 5p13.3 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSUB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SUB1
dbVarSUB1
ClinVarSUB1
1000_GenomesSUB1 
Exome Variant ServerSUB1
ExAC (Exome Aggregation Consortium)SUB1 (select the gene name)
Genetic variants : HAPMAP10923
Genomic Variants (DGV)SUB1 [DGVbeta]
DECIPHER (Syndromes)5:32585605-32604185  ENSG00000113387
CONAN: Copy Number AnalysisSUB1 
Mutations
ICGC Data PortalSUB1 
TCGA Data PortalSUB1 
Broad Tumor PortalSUB1
OASIS PortalSUB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSUB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSUB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SUB1
DgiDB (Drug Gene Interaction Database)SUB1
DoCM (Curated mutations)SUB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SUB1 (select a term)
intoGenSUB1
Cancer3DSUB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600503   
Orphanet
MedgenSUB1
Genetic Testing Registry SUB1
NextProtP53999 [Medical]
TSGene10923
GENETestsSUB1
Huge Navigator SUB1 [HugePedia]
snp3D : Map Gene to Disease10923
BioCentury BCIQSUB1
ClinGenSUB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10923
Chemical/Pharm GKB GenePA142670858
Clinical trialSUB1
Miscellaneous
canSAR (ICR)SUB1 (select the gene name)
Probes
Litterature
PubMed72 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSUB1
EVEXSUB1
GoPubMedSUB1
iHOPSUB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:21:25 CEST 2017

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