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SUCO (SUN domain containing ossification factor)

Identity

Alias_namesC1orf9
chromosome 1 open reading frame 9
Alias_symbol (synonym)CH1
SLP1
OPT
Other alias
HGNC (Hugo) SUCO
LocusID (NCBI) 51430
Atlas_Id 74357
Location 1q24.3  [Link to chromosome band 1q24]
Location_base_pair Starts at 172533118 and ends at 172611833 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SUCO (1q24.3) / C1orf105 (1q24.3)SUCO (1q24.3) / DARS2 (1q25.1)SUCO (1q24.3) / DNM3 (1q24.3)
SUCO (1q24.3) / ZCWPW2 (3p24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SUCO   1240
Cards
Entrez_Gene (NCBI)SUCO  51430  SUN domain containing ossification factor
AliasesC1orf9; CH1; OPT; SLP1
GeneCards (Weizmann)SUCO
Ensembl hg19 (Hinxton)ENSG00000094975 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000094975 [Gene_View]  chr1:172533118-172611833 [Contig_View]  SUCO [Vega]
ICGC DataPortalENSG00000094975
TCGA cBioPortalSUCO
AceView (NCBI)SUCO
Genatlas (Paris)SUCO
WikiGenes51430
SOURCE (Princeton)SUCO
Genetics Home Reference (NIH)SUCO
Genomic and cartography
GoldenPath hg38 (UCSC)SUCO  -     chr1:172533118-172611833 +  1q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SUCO  -     1q24.3   [Description]    (hg19-Feb_2009)
EnsemblSUCO - 1q24.3 [CytoView hg19]  SUCO - 1q24.3 [CytoView hg38]
Mapping of homologs : NCBISUCO [Mapview hg19]  SUCO [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF097535 AJ250075 AK302509 AK302949 AL035291
RefSeq transcript (Entrez)NM_001282750 NM_001282751 NM_014283 NM_016227
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SUCO
Cluster EST : UnigeneHs.204559 [ NCBI ]
CGAP (NCI)Hs.204559
Alternative Splicing GalleryENSG00000094975
Gene ExpressionSUCO [ NCBI-GEO ]   SUCO [ EBI - ARRAY_EXPRESS ]   SUCO [ SEEK ]   SUCO [ MEM ]
Gene Expression Viewer (FireBrowse)SUCO [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51430
GTEX Portal (Tissue expression)SUCO
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBS9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBS9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBS9
Splice isoforms : SwissVarQ9UBS9
PhosPhoSitePlusQ9UBS9
Domaine pattern : Prosite (Expaxy)SUN (PS51469)   
Domains : Interpro (EBI)Galactose-bd-like    SUN_dom   
Domain families : Pfam (Sanger)Sad1_UNC (PF07738)   
Domain families : Pfam (NCBI)pfam07738   
Conserved Domain (NCBI)SUCO
DMDM Disease mutations51430
Blocks (Seattle)SUCO
SuperfamilyQ9UBS9
Human Protein AtlasENSG00000094975
Peptide AtlasQ9UBS9
HPRD12732
IPIIPI00003441   IPI00908595   IPI00008231   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBS9
IntAct (EBI)Q9UBS9
FunCoupENSG00000094975
BioGRIDSUCO
STRING (EMBL)SUCO
ZODIACSUCO
Ontologies - Pathways
QuickGOQ9UBS9
Ontology : AmiGOossification  rough endoplasmic reticulum  multicellular organism development  membrane  integral component of membrane  rough endoplasmic reticulum membrane  positive regulation of collagen biosynthetic process  positive regulation of osteoblast differentiation  regulation of bone remodeling  
Ontology : EGO-EBIossification  rough endoplasmic reticulum  multicellular organism development  membrane  integral component of membrane  rough endoplasmic reticulum membrane  positive regulation of collagen biosynthetic process  positive regulation of osteoblast differentiation  regulation of bone remodeling  
NDEx NetworkSUCO
Atlas of Cancer Signalling NetworkSUCO
Wikipedia pathwaysSUCO
Orthology - Evolution
OrthoDB51430
GeneTree (enSembl)ENSG00000094975
Phylogenetic Trees/Animal Genes : TreeFamSUCO
HOVERGENQ9UBS9
HOGENOMQ9UBS9
Homologs : HomoloGeneSUCO
Homology/Alignments : Family Browser (UCSC)SUCO
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSUCO [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SUCO
dbVarSUCO
ClinVarSUCO
1000_GenomesSUCO 
Exome Variant ServerSUCO
ExAC (Exome Aggregation Consortium)SUCO (select the gene name)
Genetic variants : HAPMAP51430
Genomic Variants (DGV)SUCO [DGVbeta]
DECIPHERSUCO [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSUCO 
Mutations
ICGC Data PortalSUCO 
TCGA Data PortalSUCO 
Broad Tumor PortalSUCO
OASIS PortalSUCO [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSUCO
BioMutasearch SUCO
DgiDB (Drug Gene Interaction Database)SUCO
DoCM (Curated mutations)SUCO (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SUCO (select a term)
intoGenSUCO
Cancer3DSUCO(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSUCO
Genetic Testing Registry SUCO
NextProtQ9UBS9 [Medical]
TSGene51430
GENETestsSUCO
Target ValidationSUCO
Huge Navigator SUCO [HugePedia]
snp3D : Map Gene to Disease51430
BioCentury BCIQSUCO
ClinGenSUCO
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51430
Chemical/Pharm GKB GenePA25621
Clinical trialSUCO
Miscellaneous
canSAR (ICR)SUCO (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSUCO
EVEXSUCO
GoPubMedSUCO
iHOPSUCO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:44 CEST 2017

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