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SUDS3 (SDS3 homolog, SIN3A corepressor complex component)

Identity

Alias_names45kDa
Alias_symbol (synonym)SDS3
FLJ00052
SAP45
Other alias
HGNC (Hugo) SUDS3
LocusID (NCBI) 64426
Atlas_Id 52243
Location 12q24.23  [Link to chromosome band 12q24]
Location_base_pair Starts at 118376553 and ends at 118418035 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SUDS3 (12q24.23) / LOC100506548 (5p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SUDS3   29545
Cards
Entrez_Gene (NCBI)SUDS3  64426  SDS3 homolog, SIN3A corepressor complex component
AliasesSAP45; SDS3
GeneCards (Weizmann)SUDS3
Ensembl hg19 (Hinxton)ENSG00000111707 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111707 [Gene_View]  chr12:118376553-118418035 [Contig_View]  SUDS3 [Vega]
ICGC DataPortalENSG00000111707
TCGA cBioPortalSUDS3
AceView (NCBI)SUDS3
Genatlas (Paris)SUDS3
WikiGenes64426
SOURCE (Princeton)SUDS3
Genetics Home Reference (NIH)SUDS3
Genomic and cartography
GoldenPath hg38 (UCSC)SUDS3  -     chr12:118376553-118418035 +  12q24.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SUDS3  -     12q24.23   [Description]    (hg19-Feb_2009)
EnsemblSUDS3 - 12q24.23 [CytoView hg19]  SUDS3 - 12q24.23 [CytoView hg38]
Mapping of homologs : NCBISUDS3 [Mapview hg19]  SUDS3 [Mapview hg38]
OMIM608250   
Gene and transcription
Genbank (Entrez)AA916093 AK023801 AK024460 AK026749 BC030252
RefSeq transcript (Entrez)NM_022491
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SUDS3
Cluster EST : UnigeneHs.602312 [ NCBI ]
CGAP (NCI)Hs.602312
Alternative Splicing GalleryENSG00000111707
Gene ExpressionSUDS3 [ NCBI-GEO ]   SUDS3 [ EBI - ARRAY_EXPRESS ]   SUDS3 [ SEEK ]   SUDS3 [ MEM ]
Gene Expression Viewer (FireBrowse)SUDS3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64426
GTEX Portal (Tissue expression)SUDS3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H7L9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H7L9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H7L9
Splice isoforms : SwissVarQ9H7L9
PhosPhoSitePlusQ9H7L9
Domains : Interpro (EBI)Sds3   
Domain families : Pfam (Sanger)Sds3 (PF08598)   
Domain families : Pfam (NCBI)pfam08598   
Domain families : Smart (EMBL)Sds3 (SM01401)  
Conserved Domain (NCBI)SUDS3
DMDM Disease mutations64426
Blocks (Seattle)SUDS3
SuperfamilyQ9H7L9
Human Protein AtlasENSG00000111707
Peptide AtlasQ9H7L9
HPRD12196
IPIIPI00607645   IPI01010881   
Protein Interaction databases
DIP (DOE-UCLA)Q9H7L9
IntAct (EBI)Q9H7L9
FunCoupENSG00000111707
BioGRIDSUDS3
STRING (EMBL)SUDS3
ZODIACSUDS3
Ontologies - Pathways
QuickGOQ9H7L9
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  histone deacetylase activity  histone deacetylase activity  protein binding  nucleus  nucleoplasm  cytosol  transcription, DNA-templated  apoptotic process  histone deacetylation  protein deubiquitination  Sin3 complex  nuclear body  enzyme binding  substantia nigra development  histone deacetylase binding  histone deacetylase binding  positive regulation of apoptotic process  negative regulation of transcription, DNA-templated  Sin3-type complex  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  histone deacetylase activity  histone deacetylase activity  protein binding  nucleus  nucleoplasm  cytosol  transcription, DNA-templated  apoptotic process  histone deacetylation  protein deubiquitination  Sin3 complex  nuclear body  enzyme binding  substantia nigra development  histone deacetylase binding  histone deacetylase binding  positive regulation of apoptotic process  negative regulation of transcription, DNA-templated  Sin3-type complex  
NDEx NetworkSUDS3
Atlas of Cancer Signalling NetworkSUDS3
Wikipedia pathwaysSUDS3
Orthology - Evolution
OrthoDB64426
GeneTree (enSembl)ENSG00000111707
Phylogenetic Trees/Animal Genes : TreeFamSUDS3
HOVERGENQ9H7L9
HOGENOMQ9H7L9
Homologs : HomoloGeneSUDS3
Homology/Alignments : Family Browser (UCSC)SUDS3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSUDS3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SUDS3
dbVarSUDS3
ClinVarSUDS3
1000_GenomesSUDS3 
Exome Variant ServerSUDS3
ExAC (Exome Aggregation Consortium)SUDS3 (select the gene name)
Genetic variants : HAPMAP64426
Genomic Variants (DGV)SUDS3 [DGVbeta]
DECIPHERSUDS3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSUDS3 
Mutations
ICGC Data PortalSUDS3 
TCGA Data PortalSUDS3 
Broad Tumor PortalSUDS3
OASIS PortalSUDS3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSUDS3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSUDS3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SUDS3
DgiDB (Drug Gene Interaction Database)SUDS3
DoCM (Curated mutations)SUDS3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SUDS3 (select a term)
intoGenSUDS3
Cancer3DSUDS3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608250   
Orphanet
MedgenSUDS3
Genetic Testing Registry SUDS3
NextProtQ9H7L9 [Medical]
TSGene64426
GENETestsSUDS3
Huge Navigator SUDS3 [HugePedia]
snp3D : Map Gene to Disease64426
BioCentury BCIQSUDS3
ClinGenSUDS3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64426
Chemical/Pharm GKB GenePA143485626
Clinical trialSUDS3
Miscellaneous
canSAR (ICR)SUDS3 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSUDS3
EVEXSUDS3
GoPubMedSUDS3
iHOPSUDS3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:39:46 CEST 2017

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