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SUGCT (succinyl-CoA:glutarate-CoA transferase)

Identity

Alias_namesC7orf10
chromosome 7 open reading frame 10
Alias_symbol (synonym)FLJ11808
ORF19
DERP13
Other aliasGA3
HGNC (Hugo) SUGCT
LocusID (NCBI) 79783
Atlas_Id 74358
Location 7p14.1  [Link to chromosome band 7p14]
Location_base_pair Starts at 40134976 and ends at 40860767 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BRAF (7q34) / SUGCT (7p14.1)CCM2 (7p13) / SUGCT (7p14.1)GLI3 (7p14.1) / SUGCT (7p14.1)
HIBADH (7p15.2) / SUGCT (7p14.1)SELENBP1 (1q21.3) / SUGCT (7p14.1)SUGCT (7p14.1) / CRYAB (11q23.1)
SUGCT (7p14.1) / KAT2A (17q21.2)SUGCT (7p14.1) / POU6F2 (7p14.1)ZBED4 (22q13.33) / SUGCT (7p14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SUGCT   16001
Cards
Entrez_Gene (NCBI)SUGCT  79783  succinyl-CoA:glutarate-CoA transferase
AliasesC7orf10; DERP13; GA3; ORF19
GeneCards (Weizmann)SUGCT
Ensembl hg19 (Hinxton)ENSG00000175600 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175600 [Gene_View]  chr7:40134976-40860767 [Contig_View]  SUGCT [Vega]
ICGC DataPortalENSG00000175600
TCGA cBioPortalSUGCT
AceView (NCBI)SUGCT
Genatlas (Paris)SUGCT
WikiGenes79783
SOURCE (Princeton)SUGCT
Genetics Home Reference (NIH)SUGCT
Genomic and cartography
GoldenPath hg38 (UCSC)SUGCT  -     chr7:40134976-40860767 +  7p14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SUGCT  -     7p14.1   [Description]    (hg19-Feb_2009)
EnsemblSUGCT - 7p14.1 [CytoView hg19]  SUGCT - 7p14.1 [CytoView hg38]
Mapping of homologs : NCBISUGCT [Mapview hg19]  SUGCT [Mapview hg38]
OMIM231690   609187   
Gene and transcription
Genbank (Entrez)AB014767 AF086161 AF397013 AK021870 AK296048
RefSeq transcript (Entrez)NM_001193311 NM_001193312 NM_001193313 NM_024728
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SUGCT
Cluster EST : UnigeneHs.586313 [ NCBI ]
CGAP (NCI)Hs.586313
Alternative Splicing GalleryENSG00000175600
Gene ExpressionSUGCT [ NCBI-GEO ]   SUGCT [ EBI - ARRAY_EXPRESS ]   SUGCT [ SEEK ]   SUGCT [ MEM ]
Gene Expression Viewer (FireBrowse)SUGCT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79783
GTEX Portal (Tissue expression)SUGCT
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HAC7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HAC7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HAC7
Splice isoforms : SwissVarQ9HAC7
Catalytic activity : Enzyme2.8.3.13 [ Enzyme-Expasy ]   2.8.3.132.8.3.13 [ IntEnz-EBI ]   2.8.3.13 [ BRENDA ]   2.8.3.13 [ KEGG ]   
PhosPhoSitePlusQ9HAC7
Domains : Interpro (EBI)CoA-Trfase_fam_III    CoA-Trfase_III_dom   
Domain families : Pfam (Sanger)CoA_transf_3 (PF02515)   
Domain families : Pfam (NCBI)pfam02515   
Conserved Domain (NCBI)SUGCT
DMDM Disease mutations79783
Blocks (Seattle)SUGCT
SuperfamilyQ9HAC7
Human Protein AtlasENSG00000175600
Peptide AtlasQ9HAC7
HPRD09859
IPIIPI00382989   IPI00306910   IPI00748959   IPI00922195   IPI00925393   IPI00926451   IPI00926714   
Protein Interaction databases
DIP (DOE-UCLA)Q9HAC7
IntAct (EBI)Q9HAC7
FunCoupENSG00000175600
BioGRIDSUGCT
STRING (EMBL)SUGCT
ZODIACSUGCT
Ontologies - Pathways
QuickGOQ9HAC7
Ontology : AmiGOmitochondrion  succinate-hydroxymethylglutarate CoA-transferase activity  
Ontology : EGO-EBImitochondrion  succinate-hydroxymethylglutarate CoA-transferase activity  
NDEx NetworkSUGCT
Atlas of Cancer Signalling NetworkSUGCT
Wikipedia pathwaysSUGCT
Orthology - Evolution
OrthoDB79783
GeneTree (enSembl)ENSG00000175600
Phylogenetic Trees/Animal Genes : TreeFamSUGCT
HOVERGENQ9HAC7
HOGENOMQ9HAC7
Homologs : HomoloGeneSUGCT
Homology/Alignments : Family Browser (UCSC)SUGCT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSUGCT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SUGCT
dbVarSUGCT
ClinVarSUGCT
1000_GenomesSUGCT 
Exome Variant ServerSUGCT
ExAC (Exome Aggregation Consortium)SUGCT (select the gene name)
Genetic variants : HAPMAP79783
Genomic Variants (DGV)SUGCT [DGVbeta]
DECIPHERSUGCT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSUGCT 
Mutations
ICGC Data PortalSUGCT 
TCGA Data PortalSUGCT 
Broad Tumor PortalSUGCT
OASIS PortalSUGCT [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSUGCT
BioMutasearch SUGCT
DgiDB (Drug Gene Interaction Database)SUGCT
DoCM (Curated mutations)SUGCT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SUGCT (select a term)
intoGenSUGCT
Cancer3DSUGCT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM231690    609187   
Orphanet10395   
MedgenSUGCT
Genetic Testing Registry SUGCT
NextProtQ9HAC7 [Medical]
TSGene79783
GENETestsSUGCT
Target ValidationSUGCT
Huge Navigator SUGCT [HugePedia]
snp3D : Map Gene to Disease79783
BioCentury BCIQSUGCT
ClinGenSUGCT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79783
Chemical/Pharm GKB GenePA25942
Clinical trialSUGCT
Miscellaneous
canSAR (ICR)SUGCT (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSUGCT
EVEXSUGCT
GoPubMedSUGCT
iHOPSUGCT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed May 31 15:44:31 CEST 2017

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