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SUGCT (succinyl-CoA:glutarate-CoA transferase)

Identity

Alias (NCBI)C7orf10
DERP13
GA3
ORF19
HGNC (Hugo) SUGCT
HGNC Alias symbFLJ11808
ORF19
DERP13
HGNC Alias nameRussel-Silver syndrome candidate
 dermal papilla derived protein 13
HGNC Previous nameC7orf10
HGNC Previous namechromosome 7 open reading frame 10
LocusID (NCBI) 79783
Atlas_Id 74358
Location 7p14.1  [Link to chromosome band 7p14]
Location_base_pair Starts at 40135005 and ends at 40860760 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BRAF (7q34)::SUGCT (7p14.1)CCM2 (7p13)::SUGCT (7p14.1)GLI3 (7p14.1)::SUGCT (7p14.1)
HIBADH (7p15.2)::SUGCT (7p14.1)SELENBP1 (1q21.3)::SUGCT (7p14.1)SUGCT (7p14.1)::CRYAB (11q23.1)
SUGCT (7p14.1)::KAT2A (17q21.2)SUGCT (7p14.1)::POU6F2 (7p14.1)ZBED4 (22q13.33)::SUGCT (7p14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SUGCT   16001
Cards
Entrez_Gene (NCBI)SUGCT    succinyl-CoA:glutarate-CoA transferase
AliasesC7orf10; DERP13; GA3; ORF19
GeneCards (Weizmann)SUGCT
Ensembl hg19 (Hinxton)ENSG00000175600 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175600 [Gene_View]  ENSG00000175600 [Sequence]  chr7:40135005-40860760 [Contig_View]  SUGCT [Vega]
ICGC DataPortalENSG00000175600
TCGA cBioPortalSUGCT
AceView (NCBI)SUGCT
Genatlas (Paris)SUGCT
SOURCE (Princeton)SUGCT
Genetics Home Reference (NIH)SUGCT
Genomic and cartography
GoldenPath hg38 (UCSC)SUGCT  -     chr7:40135005-40860760 +  7p14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SUGCT  -     7p14.1   [Description]    (hg19-Feb_2009)
GoldenPathSUGCT - 7p14.1 [CytoView hg19]  SUGCT - 7p14.1 [CytoView hg38]
ImmunoBaseENSG00000175600
Genome Data Viewer NCBISUGCT [Mapview hg19]  
OMIM231690   609187   
Gene and transcription
Genbank (Entrez)AB014767 AF086161 AF397013 AK021870 AK296048
RefSeq transcript (Entrez)NM_001193311 NM_001193312 NM_001193313 NM_024728
Consensus coding sequences : CCDS (NCBI)SUGCT
Gene ExpressionSUGCT [ NCBI-GEO ]   SUGCT [ EBI - ARRAY_EXPRESS ]   SUGCT [ SEEK ]   SUGCT [ MEM ]
Gene Expression Viewer (FireBrowse)SUGCT [ Firebrowse - Broad ]
GenevisibleExpression of SUGCT in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79783
GTEX Portal (Tissue expression)SUGCT
Human Protein AtlasENSG00000175600-SUGCT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HAC7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HAC7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HAC7
Catalytic activity : Enzyme2.8.3.13 [ Enzyme-Expasy ]   2.8.3.132.8.3.13 [ IntEnz-EBI ]   2.8.3.13 [ BRENDA ]   2.8.3.13 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ9HAC7
Domains : Interpro (EBI)CoA-Trfase_fam_III    CoA-Trfase_III_dom_sf   
Domain families : Pfam (Sanger)CoA_transf_3 (PF02515)   
Domain families : Pfam (NCBI)pfam02515   
Conserved Domain (NCBI)SUGCT
SuperfamilyQ9HAC7
AlphaFold pdb e-kbQ9HAC7   
Human Protein Atlas [tissue]ENSG00000175600-SUGCT [tissue]
HPRD09859
Protein Interaction databases
DIP (DOE-UCLA)Q9HAC7
IntAct (EBI)Q9HAC7
BioGRIDSUGCT
STRING (EMBL)SUGCT
ZODIACSUGCT
Ontologies - Pathways
QuickGOQ9HAC7
Ontology : AmiGOmitochondrion  succinate-hydroxymethylglutarate CoA-transferase activity  
Ontology : EGO-EBImitochondrion  succinate-hydroxymethylglutarate CoA-transferase activity  
NDEx NetworkSUGCT
Atlas of Cancer Signalling NetworkSUGCT
Wikipedia pathwaysSUGCT
Orthology - Evolution
OrthoDB79783
GeneTree (enSembl)ENSG00000175600
Phylogenetic Trees/Animal Genes : TreeFamSUGCT
Homologs : HomoloGeneSUGCT
Homology/Alignments : Family Browser (UCSC)SUGCT
Gene fusions - Rearrangements
Fusion : QuiverSUGCT
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSUGCT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SUGCT
dbVarSUGCT
ClinVarSUGCT
MonarchSUGCT
1000_GenomesSUGCT 
Exome Variant ServerSUGCT
GNOMAD BrowserENSG00000175600
Varsome BrowserSUGCT
ACMGSUGCT variants
VarityQ9HAC7
Genomic Variants (DGV)SUGCT [DGVbeta]
DECIPHERSUGCT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSUGCT 
Mutations
ICGC Data PortalSUGCT 
TCGA Data PortalSUGCT 
Broad Tumor PortalSUGCT
OASIS PortalSUGCT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSUGCT  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSUGCT
Mutations and Diseases : HGMDSUGCT
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSUGCT
DgiDB (Drug Gene Interaction Database)SUGCT
DoCM (Curated mutations)SUGCT
CIViC (Clinical Interpretations of Variants in Cancer)SUGCT
Cancer3DSUGCT
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM231690    609187   
Orphanet10395   
DisGeNETSUGCT
MedgenSUGCT
Genetic Testing Registry SUGCT
NextProtQ9HAC7 [Medical]
GENETestsSUGCT
Target ValidationSUGCT
Huge Navigator SUGCT [HugePedia]
ClinGenSUGCT
Clinical trials, drugs, therapy
MyCancerGenomeSUGCT
Protein Interactions : CTDSUGCT
Pharm GKB GenePA25942
PharosQ9HAC7
Clinical trialSUGCT
Miscellaneous
canSAR (ICR)SUGCT
HarmonizomeSUGCT
ARCHS4SUGCT
DataMed IndexSUGCT
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSUGCT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Jan 20 13:54:23 CET 2022

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