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SUGP1 (SURP and G-patch domain containing 1)

Identity

Alias_namesSF4
splicing factor 4
Alias_symbol (synonym)F23858
DKFZp434E2216
RBP
Other alias
HGNC (Hugo) SUGP1
LocusID (NCBI) 57794
Atlas_Id 74359
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 19276513 and ends at 19320512 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SNRPN (15q11.2) / SUGP1 (19p13.11)SPPL2B (19p13.3) / SUGP1 (19p13.11)SUGP1 (19p13.11) / SCGB3A1 (5q35.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SUGP1   18643
Cards
Entrez_Gene (NCBI)SUGP1  57794  SURP and G-patch domain containing 1
AliasesF23858; RBP; SF4
GeneCards (Weizmann)SUGP1
Ensembl hg19 (Hinxton)ENSG00000105705 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105705 [Gene_View]  chr19:19276513-19320512 [Contig_View]  SUGP1 [Vega]
ICGC DataPortalENSG00000105705
TCGA cBioPortalSUGP1
AceView (NCBI)SUGP1
Genatlas (Paris)SUGP1
WikiGenes57794
SOURCE (Princeton)SUGP1
Genetics Home Reference (NIH)SUGP1
Genomic and cartography
GoldenPath hg38 (UCSC)SUGP1  -     chr19:19276513-19320512 -  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SUGP1  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblSUGP1 - 19p13.11 [CytoView hg19]  SUGP1 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBISUGP1 [Mapview hg19]  SUGP1 [Mapview hg38]
OMIM607992   
Gene and transcription
Genbank (Entrez)AF521128 AK092745 AK096152 AK292085 AK294618
RefSeq transcript (Entrez)NM_021164 NM_172231 NM_182812
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SUGP1
Cluster EST : UnigeneHs.515274 [ NCBI ]
CGAP (NCI)Hs.515274
Alternative Splicing GalleryENSG00000105705
Gene ExpressionSUGP1 [ NCBI-GEO ]   SUGP1 [ EBI - ARRAY_EXPRESS ]   SUGP1 [ SEEK ]   SUGP1 [ MEM ]
Gene Expression Viewer (FireBrowse)SUGP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57794
GTEX Portal (Tissue expression)SUGP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IWZ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IWZ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IWZ8
Splice isoforms : SwissVarQ8IWZ8
PhosPhoSitePlusQ8IWZ8
Domaine pattern : Prosite (Expaxy)G_PATCH (PS50174)    SURP (PS50128)   
Domains : Interpro (EBI)G_patch_dom    Surp   
Domain families : Pfam (Sanger)G-patch (PF01585)    Surp (PF01805)   
Domain families : Pfam (NCBI)pfam01585    pfam01805   
Domain families : Smart (EMBL)G_patch (SM00443)  SWAP (SM00648)  
Conserved Domain (NCBI)SUGP1
DMDM Disease mutations57794
Blocks (Seattle)SUGP1
SuperfamilyQ8IWZ8
Human Protein AtlasENSG00000105705
Peptide AtlasQ8IWZ8
HPRD10468
IPIIPI00103419   IPI00337787   IPI01009498   
Protein Interaction databases
DIP (DOE-UCLA)Q8IWZ8
IntAct (EBI)Q8IWZ8
FunCoupENSG00000105705
BioGRIDSUGP1
STRING (EMBL)SUGP1
ZODIACSUGP1
Ontologies - Pathways
QuickGOQ8IWZ8
Ontology : AmiGOmRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  spliceosomal complex  
Ontology : EGO-EBImRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  spliceosomal complex  
NDEx NetworkSUGP1
Atlas of Cancer Signalling NetworkSUGP1
Wikipedia pathwaysSUGP1
Orthology - Evolution
OrthoDB57794
GeneTree (enSembl)ENSG00000105705
Phylogenetic Trees/Animal Genes : TreeFamSUGP1
HOVERGENQ8IWZ8
HOGENOMQ8IWZ8
Homologs : HomoloGeneSUGP1
Homology/Alignments : Family Browser (UCSC)SUGP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSUGP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SUGP1
dbVarSUGP1
ClinVarSUGP1
1000_GenomesSUGP1 
Exome Variant ServerSUGP1
ExAC (Exome Aggregation Consortium)SUGP1 (select the gene name)
Genetic variants : HAPMAP57794
Genomic Variants (DGV)SUGP1 [DGVbeta]
DECIPHERSUGP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSUGP1 
Mutations
ICGC Data PortalSUGP1 
TCGA Data PortalSUGP1 
Broad Tumor PortalSUGP1
OASIS PortalSUGP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSUGP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSUGP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SUGP1
DgiDB (Drug Gene Interaction Database)SUGP1
DoCM (Curated mutations)SUGP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SUGP1 (select a term)
intoGenSUGP1
Cancer3DSUGP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607992   
Orphanet
MedgenSUGP1
Genetic Testing Registry SUGP1
NextProtQ8IWZ8 [Medical]
TSGene57794
GENETestsSUGP1
Target ValidationSUGP1
Huge Navigator SUGP1 [HugePedia]
snp3D : Map Gene to Disease57794
BioCentury BCIQSUGP1
ClinGenSUGP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57794
Chemical/Pharm GKB GenePA165394338
Clinical trialSUGP1
Miscellaneous
canSAR (ICR)SUGP1 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSUGP1
EVEXSUGP1
GoPubMedSUGP1
iHOPSUGP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:44 CEST 2017

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