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SUGP2 (SURP and G-patch domain containing 2)

Identity

Alias_namesSFRS14
splicing factor
Alias_symbol (synonym)KIAA0365
Other aliasSRFS14
HGNC (Hugo) SUGP2
LocusID (NCBI) 10147
Atlas_Id 54676
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 18990887 and ends at 19033571 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KMT2A (11q23.3) / SUGP2 (19p13.11)KPNA6 (1p35.1) / SUGP2 (19p13.11)LUZP1 (1p36.12) / SUGP2 (19p13.11)
SUGP2 (19p13.11) / ARMC6 (19p13.11)SUGP2 (19p13.11) / EIF4G2 (11p15.3)SUGP2 (19p13.11) / ITPR2 (12p12.1)
SUGP2 (19p13.11) / MEF2B (19p13.11)SUGP2 (19p13.11) / SUGP2 (19p13.11)UBA52 (19p13.11) / SUGP2 (19p13.11)
UQCR11 (19p13.3) / SUGP2 (19p13.11)VTI1A (10q25.2) / SUGP2 (19p13.11)WDR74 (11q12.3) / SUGP2 (19p13.11)
SUGP2 19p13.11 / MEF2B 19p13.11VTI1A 10q25.2 / SUGP2 19p13.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(11;19)(q23;p13) KMT2A/SUGP2


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(10;19)(q25;p13) VTI1A/SUGP2
SUGP2/MEF2B (19p13)


External links

Nomenclature
HGNC (Hugo)SUGP2   18641
Cards
Entrez_Gene (NCBI)SUGP2  10147  SURP and G-patch domain containing 2
AliasesSFRS14; SRFS14
GeneCards (Weizmann)SUGP2
Ensembl hg19 (Hinxton)ENSG00000064607 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000064607 [Gene_View]  ENSG00000064607 [Sequence]  chr19:18990887-19033571 [Contig_View]  SUGP2 [Vega]
ICGC DataPortalENSG00000064607
TCGA cBioPortalSUGP2
AceView (NCBI)SUGP2
Genatlas (Paris)SUGP2
WikiGenes10147
SOURCE (Princeton)SUGP2
Genetics Home Reference (NIH)SUGP2
Genomic and cartography
GoldenPath hg38 (UCSC)SUGP2  -     chr19:18990887-19033571 -  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SUGP2  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblSUGP2 - 19p13.11 [CytoView hg19]  SUGP2 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBISUGP2 [Mapview hg19]  SUGP2 [Mapview hg38]
OMIM607993   
Gene and transcription
Genbank (Entrez)AA505711 AB002363 AF518874 AI039052 AK025508
RefSeq transcript (Entrez)NM_001017392 NM_001321697 NM_001321698 NM_001321699 NM_001352071 NM_014884
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SUGP2
Cluster EST : UnigeneHs.732621 [ NCBI ]
CGAP (NCI)Hs.732621
Alternative Splicing GalleryENSG00000064607
Gene ExpressionSUGP2 [ NCBI-GEO ]   SUGP2 [ EBI - ARRAY_EXPRESS ]   SUGP2 [ SEEK ]   SUGP2 [ MEM ]
Gene Expression Viewer (FireBrowse)SUGP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10147
GTEX Portal (Tissue expression)SUGP2
Human Protein AtlasENSG00000064607-SUGP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IX01   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IX01  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IX01
Splice isoforms : SwissVarQ8IX01
PhosPhoSitePlusQ8IX01
Domaine pattern : Prosite (Expaxy)G_PATCH (PS50174)    SURP (PS50128)   
Domains : Interpro (EBI)G_patch_dom    Surp    SWAP/Surp_sf   
Domain families : Pfam (Sanger)G-patch (PF01585)    Surp (PF01805)   
Domain families : Pfam (NCBI)pfam01585    pfam01805   
Domain families : Smart (EMBL)G_patch (SM00443)  SWAP (SM00648)  
Conserved Domain (NCBI)SUGP2
DMDM Disease mutations10147
Blocks (Seattle)SUGP2
PDB (RSDB)1X4P   
PDB Europe1X4P   
PDB (PDBSum)1X4P   
PDB (IMB)1X4P   
Structural Biology KnowledgeBase1X4P   
SCOP (Structural Classification of Proteins)1X4P   
CATH (Classification of proteins structures)1X4P   
SuperfamilyQ8IX01
Human Protein Atlas [tissue]ENSG00000064607-SUGP2 [tissue]
Peptide AtlasQ8IX01
HPRD10469
IPIIPI00293162   IPI00554438   IPI00910799   IPI00158020   
Protein Interaction databases
DIP (DOE-UCLA)Q8IX01
IntAct (EBI)Q8IX01
FunCoupENSG00000064607
BioGRIDSUGP2
STRING (EMBL)SUGP2
ZODIACSUGP2
Ontologies - Pathways
QuickGOQ8IX01
Ontology : AmiGORNA binding  nucleoplasm  mRNA processing  RNA splicing  nuclear body  
Ontology : EGO-EBIRNA binding  nucleoplasm  mRNA processing  RNA splicing  nuclear body  
NDEx NetworkSUGP2
Atlas of Cancer Signalling NetworkSUGP2
Wikipedia pathwaysSUGP2
Orthology - Evolution
OrthoDB10147
GeneTree (enSembl)ENSG00000064607
Phylogenetic Trees/Animal Genes : TreeFamSUGP2
HOGENOMQ8IX01
Homologs : HomoloGeneSUGP2
Homology/Alignments : Family Browser (UCSC)SUGP2
Gene fusions - Rearrangements
Fusion : MitelmanSUGP2/MEF2B [19p13.11/19p13.11]  
Fusion : MitelmanVTI1A/SUGP2 [10q25.2/19p13.11]  [t(10;19)(q25;p13)]  
Fusion PortalSUGP2 19p13.11 MEF2B 19p13.11 BRCA
Fusion PortalVTI1A 10q25.2 SUGP2 19p13.11 PRAD
Fusion : QuiverSUGP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSUGP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SUGP2
dbVarSUGP2
ClinVarSUGP2
1000_GenomesSUGP2 
Exome Variant ServerSUGP2
ExAC (Exome Aggregation Consortium)ENSG00000064607
GNOMAD BrowserENSG00000064607
Varsome BrowserSUGP2
Genetic variants : HAPMAP10147
Genomic Variants (DGV)SUGP2 [DGVbeta]
DECIPHERSUGP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSUGP2 
Mutations
ICGC Data PortalSUGP2 
TCGA Data PortalSUGP2 
Broad Tumor PortalSUGP2
OASIS PortalSUGP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSUGP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSUGP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SUGP2
DgiDB (Drug Gene Interaction Database)SUGP2
DoCM (Curated mutations)SUGP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SUGP2 (select a term)
intoGenSUGP2
Cancer3DSUGP2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607993   
Orphanet
DisGeNETSUGP2
MedgenSUGP2
Genetic Testing Registry SUGP2
NextProtQ8IX01 [Medical]
TSGene10147
GENETestsSUGP2
Target ValidationSUGP2
Huge Navigator SUGP2 [HugePedia]
snp3D : Map Gene to Disease10147
BioCentury BCIQSUGP2
ClinGenSUGP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10147
Chemical/Pharm GKB GenePA165394371
Clinical trialSUGP2
Miscellaneous
canSAR (ICR)SUGP2 (select the gene name)
DataMed IndexSUGP2
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSUGP2
EVEXSUGP2
GoPubMedSUGP2
iHOPSUGP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jan 17 18:40:57 CET 2019

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