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SUGT1 (SGT1 homolog, MIS12 kinetochore complex assembly cochaperone)

Identity

Alias_namesSGT1
Alias_symbol (synonym)SGT1
Other alias
HGNC (Hugo) SUGT1
LocusID (NCBI) 10910
Atlas_Id 51737
Location 13q14.3  [Link to chromosome band 13q14]
Location_base_pair Starts at 52652691 and ends at 52688354 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PREX1 (20q13.13) / SUGT1 (13q14.3)SUGT1 (13q14.3) / SUGT1 (13q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SUGT1   16987
Cards
Entrez_Gene (NCBI)SUGT1  10910  SGT1 homolog, MIS12 kinetochore complex assembly cochaperone
AliasesSGT1
GeneCards (Weizmann)SUGT1
Ensembl hg19 (Hinxton)ENSG00000165416 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165416 [Gene_View]  chr13:52652691-52688354 [Contig_View]  SUGT1 [Vega]
ICGC DataPortalENSG00000165416
TCGA cBioPortalSUGT1
AceView (NCBI)SUGT1
Genatlas (Paris)SUGT1
WikiGenes10910
SOURCE (Princeton)SUGT1
Genetics Home Reference (NIH)SUGT1
Genomic and cartography
GoldenPath hg38 (UCSC)SUGT1  -     chr13:52652691-52688354 +  13q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SUGT1  -     13q14.3   [Description]    (hg19-Feb_2009)
EnsemblSUGT1 - 13q14.3 [CytoView hg19]  SUGT1 - 13q14.3 [CytoView hg38]
Mapping of homologs : NCBISUGT1 [Mapview hg19]  SUGT1 [Mapview hg38]
OMIM604098   
Gene and transcription
Genbank (Entrez)AF132856 AJ344097 AK291402 AK292128 AK302363
RefSeq transcript (Entrez)NM_001130912 NM_001320831 NM_006704
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SUGT1
Cluster EST : UnigeneHs.281902 [ NCBI ]
CGAP (NCI)Hs.281902
Alternative Splicing GalleryENSG00000165416
Gene ExpressionSUGT1 [ NCBI-GEO ]   SUGT1 [ EBI - ARRAY_EXPRESS ]   SUGT1 [ SEEK ]   SUGT1 [ MEM ]
Gene Expression Viewer (FireBrowse)SUGT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10910
GTEX Portal (Tissue expression)SUGT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2Z0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2Z0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2Z0
Splice isoforms : SwissVarQ9Y2Z0
PhosPhoSitePlusQ9Y2Z0
Domaine pattern : Prosite (Expaxy)CS (PS51203)    SGS (PS51048)    TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)CS_dom    HSP20-like_chaperone    SGS_dom    TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)CS (PF04969)    SGS (PF05002)   
Domain families : Pfam (NCBI)pfam04969    pfam05002   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)SUGT1
DMDM Disease mutations10910
Blocks (Seattle)SUGT1
PDB (SRS)1RL1   
PDB (PDBSum)1RL1   
PDB (IMB)1RL1   
PDB (RSDB)1RL1   
Structural Biology KnowledgeBase1RL1   
SCOP (Structural Classification of Proteins)1RL1   
CATH (Classification of proteins structures)1RL1   
SuperfamilyQ9Y2Z0
Human Protein AtlasENSG00000165416
Peptide AtlasQ9Y2Z0
IPIIPI00828150   IPI00791573   IPI01012902   IPI00001672   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2Z0
IntAct (EBI)Q9Y2Z0
FunCoupENSG00000165416
BioGRIDSUGT1
STRING (EMBL)SUGT1
ZODIACSUGT1
Ontologies - Pathways
QuickGOQ9Y2Z0
Ontology : AmiGOubiquitin ligase complex  mitotic cell cycle  kinetochore  protein binding  nucleus  cytosol  regulation of protein stability  protein complex  positive regulation by host of symbiont catalytic activity  
Ontology : EGO-EBIubiquitin ligase complex  mitotic cell cycle  kinetochore  protein binding  nucleus  cytosol  regulation of protein stability  protein complex  positive regulation by host of symbiont catalytic activity  
Pathways : KEGGNOD-like receptor signaling pathway   
NDEx NetworkSUGT1
Atlas of Cancer Signalling NetworkSUGT1
Wikipedia pathwaysSUGT1
Orthology - Evolution
OrthoDB10910
GeneTree (enSembl)ENSG00000165416
Phylogenetic Trees/Animal Genes : TreeFamSUGT1
HOVERGENQ9Y2Z0
HOGENOMQ9Y2Z0
Homologs : HomoloGeneSUGT1
Homology/Alignments : Family Browser (UCSC)SUGT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSUGT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SUGT1
dbVarSUGT1
ClinVarSUGT1
1000_GenomesSUGT1 
Exome Variant ServerSUGT1
ExAC (Exome Aggregation Consortium)SUGT1 (select the gene name)
Genetic variants : HAPMAP10910
Genomic Variants (DGV)SUGT1 [DGVbeta]
DECIPHERSUGT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSUGT1 
Mutations
ICGC Data PortalSUGT1 
TCGA Data PortalSUGT1 
Broad Tumor PortalSUGT1
OASIS PortalSUGT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSUGT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSUGT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SUGT1
DgiDB (Drug Gene Interaction Database)SUGT1
DoCM (Curated mutations)SUGT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SUGT1 (select a term)
intoGenSUGT1
Cancer3DSUGT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604098   
Orphanet
MedgenSUGT1
Genetic Testing Registry SUGT1
NextProtQ9Y2Z0 [Medical]
TSGene10910
GENETestsSUGT1
Target ValidationSUGT1
Huge Navigator SUGT1 [HugePedia]
snp3D : Map Gene to Disease10910
BioCentury BCIQSUGT1
ClinGenSUGT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10910
Chemical/Pharm GKB GenePA134880121
Clinical trialSUGT1
Miscellaneous
canSAR (ICR)SUGT1 (select the gene name)
Probes
Litterature
PubMed59 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSUGT1
EVEXSUGT1
GoPubMedSUGT1
iHOPSUGT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:33:43 CEST 2017

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