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SUGT1 (SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae))

Identity

Other namesSGT1
HGNC (Hugo) SUGT1
LocusID (NCBI) 10910
Location 13q14.3
Location_base_pair Starts at 53226831 and ends at 53262433 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)SUGT1   16987
Entrez_Gene (NCBI)SUGT1  10910  SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)
Cards
GeneCards (Weizmann)SUGT1
Ensembl (Hinxton)ENSG00000165416 [Gene_View]  chr13:53226831-53262433 [Contig_View]  SUGT1 [Vega]
AceView (NCBI)SUGT1
Genatlas (Paris)SUGT1
SOURCE (Stanford)NM_001130912 NM_006704
Genomic and cartography
GoldenPath (UCSC)SUGT1  -  13q14.3   chr13:53226831-53262433 +  13q14.3   [Description]    (hg19-Feb_2009)
EnsemblSUGT1 - 13q14.3 [CytoView]
Mapping of homologs : NCBISUGT1 [Mapview]
OMIM604098   
Gene and transcription
Genbank (Entrez)AF132856 AJ344097 AK291402 AK292128 AK302363
RefSeq transcript (SRS)NM_001130912 NM_006704
RefSeq transcript (Entrez)NM_001130912 NM_006704
RefSeq genomic (SRS)AC_000145 NC_000013 NC_018924 NG_029521 NT_024524 NW_001838080 NW_004078077
RefSeq genomic (Entrez)AC_000145 NC_000013 NC_018924 NG_029521 NT_024524 NW_001838080 NW_004078077
Consensus coding sequences : CCDS (NCBI)SUGT1
Cluster EST : UnigeneHs.281902 [ SRS ] Hs.281902 [ NCBI ]
CGAP (NCI)Hs.281902
Alternative Splicing : Fast-db (Paris)GSHG0008144
Alternative Splicing GalleryENSG00000165416
Gene ExpressionSUGT1 [ NCBI-GEO ]   SUGT1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2Z0 (SRS) Q9Y2Z0 (Uniprot)
NextProtQ9Y2Z0
With graphics : InterProQ9Y2Z0
Splice isoforms : SwissVarQ9Y2Z0(Swissvar)
Domaine pattern : Prosite (SRS)CS (PS51203)    SGS (PS51048)    TPR (PS50005)    TPR_REGION (PS50293)   
Domaine pattern : Prosite (Expaxy)CS (PS51203)    SGS (PS51048)    TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (SRS)CS-like_domain    CS_domain    HSP20-like_chaperone    SGS    TPR-contain_dom    TPR-like_helical    TPR_repeat   
Domains : Interpro (EBI)CS-like_domain    CS_domain    HSP20-like_chaperone    SGS    TPR-contain_dom    TPR-like_helical    TPR_repeat   
Related proteins : CluSTrQ9Y2Z0
Domain families : Pfam (SRS)CS (PF04969)    SGS (PF05002)   
Domain families : Pfam (Sanger)CS (PF04969)    SGS (PF05002)   
Domain families : Pfam (NCBI)pfam04969    pfam05002   
DMDM10910
Blocks (Seattle)Q9Y2Z0
PDB (SRS)1RL1   
PDB (PDBSum)1RL1   
PDB (IMB)1RL1   
PDB (RSDB)1RL1   
Human Protein AtlasENSG00000165416
IPIIPI00828150   IPI00791573   IPI01012902   IPI00001672   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2Z0
IntAct (EBI)Q9Y2Z0
FunCoupENSG00000165416
REACTOMESUGT1
Protein Interaction Database10910
BioGRIDSUGT1
InParanoidQ9Y2Z0
Interologous Interaction database Q9Y2Z0
IntegromeDBSUGT1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SUGT1
SNP (GeneSNP Utah)SUGT1
SNP : HGBaseSUGT1
Genetic variants : HAPMAPSUGT1
Somatic Mutations in Cancer : COSMICSUGT1 
CONAN: Copy Number AnalysisSUGT1 
Mutations and Diseases : HGMDSUGT1
OMIM604098   
GENETests604098   
Disease Genetic AssociationSUGT1
Huge Navigator SUGT1 [HugePedia]  SUGT1 [HugeCancerGEM]
Genomic VariantsSUGT1  SUGT1 [DGVbeta]
ClinVarSUGT1
snp3D : Map Gene to Disease10910
General knowledge
Homologs : HomoloGeneSUGT1
Homology/Alignments : Family Browser (UCSC)SUGT1
Phylogenetic Trees/Animal Genes : TreeFamSUGT1
Chemical/Protein Interactions : CTD10910
Chemical/Pharm GKB GenePA134880121
Clinical trialSUGT1
Cancer Resource (Charite)ENSG00000165416
Ontology : AmiGOubiquitin ligase complex  kinetochore  nucleus  cytosol  mitosis  nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway  innate immune response  
Ontology : EGO-EBIubiquitin ligase complex  kinetochore  nucleus  cytosol  mitosis  nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway  innate immune response  
Other databases
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
PubGeneSUGT1
iHOPSUGT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:30:47 CEST 2013
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