Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SULT1A2 (sulfotransferase family 1A member 2)

Identity

Alias (NCBI)HAST4
P-PST
P-PST 2
ST1A2
STP2
TSPST2
HGNC (Hugo) SULT1A2
HGNC Alias symbHAST4
HGNC Previous nameSTP2
HGNC Previous namesulfotransferase family, cytosolic, 1A, phenol-preferring, member 2
LocusID (NCBI) 6799
Atlas_Id 46197
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 28591943 and ends at 28596480 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SULT1A2   11454
Cards
Entrez_Gene (NCBI)SULT1A2  6799  sulfotransferase family 1A member 2
AliasesHAST4; P-PST; P-PST; ST1A2; 
STP2; TSPST2
GeneCards (Weizmann)SULT1A2
Ensembl hg19 (Hinxton)ENSG00000197165 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197165 [Gene_View]  ENSG00000197165 [Sequence]  chr16:28591943-28596480 [Contig_View]  SULT1A2 [Vega]
ICGC DataPortalENSG00000197165
TCGA cBioPortalSULT1A2
AceView (NCBI)SULT1A2
Genatlas (Paris)SULT1A2
WikiGenes6799
SOURCE (Princeton)SULT1A2
Genetics Home Reference (NIH)SULT1A2
Genomic and cartography
GoldenPath hg38 (UCSC)SULT1A2  -     chr16:28591943-28596480 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SULT1A2  -     16p11.2   [Description]    (hg19-Feb_2009)
GoldenPathSULT1A2 - 16p11.2 [CytoView hg19]  SULT1A2 - 16p11.2 [CytoView hg38]
ImmunoBaseENSG00000197165
genome Data Viewer NCBISULT1A2 [Mapview hg19]  
OMIM601292   
Gene and transcription
Genbank (Entrez)BC025763 BC052280 BC113727 BC113729 U28169
RefSeq transcript (Entrez)NM_001054 NM_001363863 NM_177528
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SULT1A2
Alternative Splicing GalleryENSG00000197165
Gene ExpressionSULT1A2 [ NCBI-GEO ]   SULT1A2 [ EBI - ARRAY_EXPRESS ]   SULT1A2 [ SEEK ]   SULT1A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SULT1A2 [ Firebrowse - Broad ]
GenevisibleExpression of SULT1A2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6799
GTEX Portal (Tissue expression)SULT1A2
Human Protein AtlasENSG00000197165-SULT1A2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP50226   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP50226  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP50226
Splice isoforms : SwissVarP50226
Catalytic activity : Enzyme2.8.2.1 [ Enzyme-Expasy ]   2.8.2.12.8.2.1 [ IntEnz-EBI ]   2.8.2.1 [ BRENDA ]   2.8.2.1 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusP50226
Domains : Interpro (EBI)P-loop_NTPase    Sulfotransferase_dom   
Domain families : Pfam (Sanger)Sulfotransfer_1 (PF00685)   
Domain families : Pfam (NCBI)pfam00685   
Conserved Domain (NCBI)SULT1A2
DMDM Disease mutations6799
Blocks (Seattle)SULT1A2
PDB (RSDB)1Z29   
PDB Europe1Z29   
PDB (PDBSum)1Z29   
PDB (IMB)1Z29   
Structural Biology KnowledgeBase1Z29   
SCOP (Structural Classification of Proteins)1Z29   
CATH (Classification of proteins structures)1Z29   
SuperfamilyP50226
Human Protein Atlas [tissue]ENSG00000197165-SULT1A2 [tissue]
Peptide AtlasP50226
HPRD03187
IPIIPI00300027   IPI00647709   IPI00640414   IPI00976309   
Protein Interaction databases
DIP (DOE-UCLA)P50226
IntAct (EBI)P50226
FunCoupENSG00000197165
BioGRIDSULT1A2
STRING (EMBL)SULT1A2
ZODIACSULT1A2
Ontologies - Pathways
QuickGOP50226
Ontology : AmiGOaryl sulfotransferase activity  protein binding  cytosol  ethanol catabolic process  catecholamine metabolic process  xenobiotic metabolic process  sulfotransferase activity  steroid metabolic process  amine biosynthetic process  phenol-containing compound metabolic process  flavonol 3-sulfotransferase activity  3'-phosphoadenosine 5'-phosphosulfate metabolic process  3'-phosphoadenosine 5'-phosphosulfate metabolic process  sulfation  
Ontology : EGO-EBIaryl sulfotransferase activity  protein binding  cytosol  ethanol catabolic process  catecholamine metabolic process  xenobiotic metabolic process  sulfotransferase activity  steroid metabolic process  amine biosynthetic process  phenol-containing compound metabolic process  flavonol 3-sulfotransferase activity  3'-phosphoadenosine 5'-phosphosulfate metabolic process  3'-phosphoadenosine 5'-phosphosulfate metabolic process  sulfation  
Pathways : KEGGChemical carcinogenesis   
NDEx NetworkSULT1A2
Atlas of Cancer Signalling NetworkSULT1A2
Wikipedia pathwaysSULT1A2
Orthology - Evolution
OrthoDB6799
GeneTree (enSembl)ENSG00000197165
Phylogenetic Trees/Animal Genes : TreeFamSULT1A2
HOGENOMP50226
Homologs : HomoloGeneSULT1A2
Homology/Alignments : Family Browser (UCSC)SULT1A2
Gene fusions - Rearrangements
Fusion : QuiverSULT1A2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSULT1A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SULT1A2
dbVarSULT1A2
ClinVarSULT1A2
1000_GenomesSULT1A2 
Exome Variant ServerSULT1A2
GNOMAD BrowserENSG00000197165
Varsome BrowserSULT1A2
Genetic variants : HAPMAP6799
Genomic Variants (DGV)SULT1A2 [DGVbeta]
DECIPHERSULT1A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSULT1A2 
Mutations
ICGC Data PortalSULT1A2 
TCGA Data PortalSULT1A2 
Broad Tumor PortalSULT1A2
OASIS PortalSULT1A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSULT1A2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSULT1A2
Mutations and Diseases : HGMDSULT1A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch SULT1A2
DgiDB (Drug Gene Interaction Database)SULT1A2
DoCM (Curated mutations)SULT1A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SULT1A2 (select a term)
intoGenSULT1A2
Cancer3DSULT1A2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601292   
Orphanet
DisGeNETSULT1A2
MedgenSULT1A2
Genetic Testing Registry SULT1A2
NextProtP50226 [Medical]
TSGene6799
GENETestsSULT1A2
Target ValidationSULT1A2
Huge Navigator SULT1A2 [HugePedia]
snp3D : Map Gene to Disease6799
BioCentury BCIQSULT1A2
ClinGenSULT1A2
Clinical trials, drugs, therapy
Protein Interactions : CTD6799
Pharm GKB GenePA341
Clinical trialSULT1A2
Miscellaneous
canSAR (ICR)SULT1A2 (select the gene name)
HarmonizomeSULT1A2
DataMed IndexSULT1A2
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSULT1A2
EVEXSULT1A2
GoPubMedSULT1A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:38:13 CEST 2020
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