Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SULT1A3 (sulfotransferase family 1A member 3)

Identity

Alias_namesSTM
sulfotransferase family
Alias_symbol (synonym)TL-PST
Other aliasHAST
HAST3
M-PST
ST1A3
ST1A3/ST1A4
ST1A5
HGNC (Hugo) SULT1A3
LocusID (NCBI) 6818
Atlas_Id 56490
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 29459886 and ends at 29464980 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SULT1A3   11455
Cards
Entrez_Gene (NCBI)SULT1A3  6818  sulfotransferase family 1A member 3
AliasesHAST; HAST3; M-PST; ST1A3; 
ST1A3/ST1A4; ST1A5; STM; TL-PST
GeneCards (Weizmann)SULT1A3
Ensembl hg19 (Hinxton)ENSG00000261052 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261052 [Gene_View]  chr16:29459886-29464980 [Contig_View]  SULT1A3 [Vega]
ICGC DataPortalENSG00000261052
TCGA cBioPortalSULT1A3
AceView (NCBI)SULT1A3
Genatlas (Paris)SULT1A3
WikiGenes6818
SOURCE (Princeton)SULT1A3
Genetics Home Reference (NIH)SULT1A3
Genomic and cartography
GoldenPath hg38 (UCSC)SULT1A3  -     chr16:29459886-29464980 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SULT1A3  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblSULT1A3 - 16p11.2 [CytoView hg19]  SULT1A3 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBISULT1A3 [Mapview hg19]  SULT1A3 [Mapview hg38]
OMIM600641   
Gene and transcription
Genbank (Entrez)AB111093 AB111094 AB111095 AB111096 AB111097
RefSeq transcript (Entrez)NM_001017387 NM_003166 NM_177552
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SULT1A3
Cluster EST : UnigeneHs.460558 [ NCBI ]
CGAP (NCI)Hs.460558
Alternative Splicing GalleryENSG00000261052
Gene ExpressionSULT1A3 [ NCBI-GEO ]   SULT1A3 [ EBI - ARRAY_EXPRESS ]   SULT1A3 [ SEEK ]   SULT1A3 [ MEM ]
Gene Expression Viewer (FireBrowse)SULT1A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6818
GTEX Portal (Tissue expression)SULT1A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DMM9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DMM9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DMM9
Splice isoforms : SwissVarP0DMM9
Catalytic activity : Enzyme2.8.2.1 [ Enzyme-Expasy ]   2.8.2.12.8.2.1 [ IntEnz-EBI ]   2.8.2.1 [ BRENDA ]   2.8.2.1 [ KEGG ]   
PhosPhoSitePlusP0DMM9
Domains : Interpro (EBI)P-loop_NTPase    Sulfotransferase_dom   
Domain families : Pfam (Sanger)Sulfotransfer_1 (PF00685)   
Domain families : Pfam (NCBI)pfam00685   
Conserved Domain (NCBI)SULT1A3
DMDM Disease mutations6818
Blocks (Seattle)SULT1A3
PDB (SRS)1CJM    2A3R   
PDB (PDBSum)1CJM    2A3R   
PDB (IMB)1CJM    2A3R   
PDB (RSDB)1CJM    2A3R   
Structural Biology KnowledgeBase1CJM    2A3R   
SCOP (Structural Classification of Proteins)1CJM    2A3R   
CATH (Classification of proteins structures)1CJM    2A3R   
SuperfamilyP0DMM9
Human Protein AtlasENSG00000261052
Peptide AtlasP0DMM9
HPRD07199
IPIIPI00446834   IPI00030730   
Protein Interaction databases
DIP (DOE-UCLA)P0DMM9
IntAct (EBI)P0DMM9
FunCoupENSG00000261052
BioGRIDSULT1A3
STRING (EMBL)SULT1A3
ZODIACSULT1A3
Ontologies - Pathways
QuickGOP0DMM9
Ontology : AmiGOaryl sulfotransferase activity  aryl sulfotransferase activity  protein binding  cytosol  ethanol catabolic process  xenobiotic metabolic process  dopamine receptor signaling pathway  sulfotransferase activity  steroid metabolic process  flavonoid metabolic process  IRE1-mediated unfolded protein response  dopamine catabolic process  sulfate binding  amine sulfotransferase activity  3'-phosphoadenosine 5'-phosphosulfate metabolic process  3'-phosphoadenosine 5'-phosphosulfate metabolic process  sulfation  ERK1 and ERK2 cascade  calcineurin-mediated signaling  NMDA selective glutamate receptor signaling pathway  negative regulation of neuron death  cellular response to dopamine  
Ontology : EGO-EBIaryl sulfotransferase activity  aryl sulfotransferase activity  protein binding  cytosol  ethanol catabolic process  xenobiotic metabolic process  dopamine receptor signaling pathway  sulfotransferase activity  steroid metabolic process  flavonoid metabolic process  IRE1-mediated unfolded protein response  dopamine catabolic process  sulfate binding  amine sulfotransferase activity  3'-phosphoadenosine 5'-phosphosulfate metabolic process  3'-phosphoadenosine 5'-phosphosulfate metabolic process  sulfation  ERK1 and ERK2 cascade  calcineurin-mediated signaling  NMDA selective glutamate receptor signaling pathway  negative regulation of neuron death  cellular response to dopamine  
Pathways : KEGGChemical carcinogenesis   
NDEx NetworkSULT1A3
Atlas of Cancer Signalling NetworkSULT1A3
Wikipedia pathwaysSULT1A3
Orthology - Evolution
OrthoDB6818
GeneTree (enSembl)ENSG00000261052
Phylogenetic Trees/Animal Genes : TreeFamSULT1A3
HOVERGENP0DMM9
HOGENOMP0DMM9
Homologs : HomoloGeneSULT1A3
Homology/Alignments : Family Browser (UCSC)SULT1A3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSULT1A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SULT1A3
dbVarSULT1A3
ClinVarSULT1A3
1000_GenomesSULT1A3 
Exome Variant ServerSULT1A3
ExAC (Exome Aggregation Consortium)SULT1A3 (select the gene name)
Genetic variants : HAPMAP6818
Genomic Variants (DGV)SULT1A3 [DGVbeta]
DECIPHERSULT1A3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSULT1A3 
Mutations
ICGC Data PortalSULT1A3 
TCGA Data PortalSULT1A3 
Broad Tumor PortalSULT1A3
OASIS PortalSULT1A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSULT1A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSULT1A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SULT1A3
DgiDB (Drug Gene Interaction Database)SULT1A3
DoCM (Curated mutations)SULT1A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SULT1A3 (select a term)
intoGenSULT1A3
Cancer3DSULT1A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600641   
Orphanet
MedgenSULT1A3
Genetic Testing Registry SULT1A3
NextProtP0DMM9 [Medical]
TSGene6818
GENETestsSULT1A3
Target ValidationSULT1A3
Huge Navigator SULT1A3 [HugePedia]
snp3D : Map Gene to Disease6818
BioCentury BCIQSULT1A3
ClinGenSULT1A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6818
Chemical/Pharm GKB GenePA344
Clinical trialSULT1A3
Miscellaneous
canSAR (ICR)SULT1A3 (select the gene name)
Probes
Litterature
PubMed62 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSULT1A3
EVEXSULT1A3
GoPubMedSULT1A3
iHOPSULT1A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:58:08 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.