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SULT1A4 (sulfotransferase family 1A member 4)

Identity

Alias_namessulfotransferase family, cytosolic, 1A, phenol-preferring, member 4
Other aliasHAST3
M-PST
ST1A3/ST1A4
ST1A4
TL-PST
HGNC (Hugo) SULT1A4
LocusID (NCBI) 445329
Atlas_Id 74363
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 29459886 and ends at 29464980 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SULT1A4   30004
Cards
Entrez_Gene (NCBI)SULT1A4  445329  sulfotransferase family 1A member 4
AliasesHAST3; M-PST; ST1A3/ST1A4; ST1A4; 
TL-PST
GeneCards (Weizmann)SULT1A4
Ensembl hg19 (Hinxton)ENSG00000213648 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213648 [Gene_View]  chr16:29459886-29464980 [Contig_View]  SULT1A4 [Vega]
ICGC DataPortalENSG00000213648
TCGA cBioPortalSULT1A4
AceView (NCBI)SULT1A4
Genatlas (Paris)SULT1A4
WikiGenes445329
SOURCE (Princeton)SULT1A4
Genetics Home Reference (NIH)SULT1A4
Genomic and cartography
GoldenPath hg38 (UCSC)SULT1A4  -     chr16:29459886-29464980 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SULT1A4  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblSULT1A4 - 16p11.2 [CytoView hg19]  SULT1A4 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBISULT1A4 [Mapview hg19]  SULT1A4 [Mapview hg38]
OMIM615819   
Gene and transcription
Genbank (Entrez)AB111093 AB111094 AB111095 AB111096 AB111097
RefSeq transcript (Entrez)NM_001017389 NM_001017390 NM_001017391
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SULT1A4
Cluster EST : UnigeneHs.744871 [ NCBI ]
CGAP (NCI)Hs.744871
Alternative Splicing GalleryENSG00000213648
Gene ExpressionSULT1A4 [ NCBI-GEO ]   SULT1A4 [ EBI - ARRAY_EXPRESS ]   SULT1A4 [ SEEK ]   SULT1A4 [ MEM ]
Gene Expression Viewer (FireBrowse)SULT1A4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)445329
GTEX Portal (Tissue expression)SULT1A4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DMN0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DMN0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DMN0
Splice isoforms : SwissVarP0DMN0
Catalytic activity : Enzyme2.8.2.1 [ Enzyme-Expasy ]   2.8.2.12.8.2.1 [ IntEnz-EBI ]   2.8.2.1 [ BRENDA ]   2.8.2.1 [ KEGG ]   
PhosPhoSitePlusP0DMN0
Domains : Interpro (EBI)P-loop_NTPase    Sulfotransferase_dom   
Domain families : Pfam (Sanger)Sulfotransfer_1 (PF00685)   
Domain families : Pfam (NCBI)pfam00685   
Conserved Domain (NCBI)SULT1A4
DMDM Disease mutations445329
Blocks (Seattle)SULT1A4
SuperfamilyP0DMN0
Human Protein AtlasENSG00000213648
Peptide AtlasP0DMN0
HPRD18659
Protein Interaction databases
DIP (DOE-UCLA)P0DMN0
IntAct (EBI)P0DMN0
FunCoupENSG00000213648
BioGRIDSULT1A4
STRING (EMBL)SULT1A4
ZODIACSULT1A4
Ontologies - Pathways
QuickGOP0DMN0
Ontology : AmiGOaryl sulfotransferase activity  cytoplasm  catecholamine metabolic process  steroid metabolic process  
Ontology : EGO-EBIaryl sulfotransferase activity  cytoplasm  catecholamine metabolic process  steroid metabolic process  
Pathways : KEGGChemical carcinogenesis   
NDEx NetworkSULT1A4
Atlas of Cancer Signalling NetworkSULT1A4
Wikipedia pathwaysSULT1A4
Orthology - Evolution
OrthoDB445329
GeneTree (enSembl)ENSG00000213648
Phylogenetic Trees/Animal Genes : TreeFamSULT1A4
HOVERGENP0DMN0
HOGENOMP0DMN0
Homologs : HomoloGeneSULT1A4
Homology/Alignments : Family Browser (UCSC)SULT1A4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSULT1A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SULT1A4
dbVarSULT1A4
ClinVarSULT1A4
1000_GenomesSULT1A4 
Exome Variant ServerSULT1A4
ExAC (Exome Aggregation Consortium)SULT1A4 (select the gene name)
Genetic variants : HAPMAP445329
Genomic Variants (DGV)SULT1A4 [DGVbeta]
DECIPHERSULT1A4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSULT1A4 
Mutations
ICGC Data PortalSULT1A4 
TCGA Data PortalSULT1A4 
Broad Tumor PortalSULT1A4
OASIS PortalSULT1A4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSULT1A4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSULT1A4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SULT1A4
DgiDB (Drug Gene Interaction Database)SULT1A4
DoCM (Curated mutations)SULT1A4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SULT1A4 (select a term)
intoGenSULT1A4
Cancer3DSULT1A4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615819   
Orphanet
MedgenSULT1A4
Genetic Testing Registry SULT1A4
NextProtP0DMN0 [Medical]
TSGene445329
GENETestsSULT1A4
Huge Navigator SULT1A4 [HugePedia]
snp3D : Map Gene to Disease445329
BioCentury BCIQSULT1A4
ClinGenSULT1A4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD445329
Chemical/Pharm GKB GenePA142670856
Clinical trialSULT1A4
Miscellaneous
canSAR (ICR)SULT1A4 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSULT1A4
EVEXSULT1A4
GoPubMedSULT1A4
iHOPSULT1A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:57:01 CEST 2017

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