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SULT1C2 (sulfotransferase family 1C member 2)

Identity

Alias_namesSULT1C1
sulfotransferase family, cytosolic, 1C, member 1
sulfotransferase family, cytosolic, 1C, member 2
Alias_symbol (synonym)ST1C1
Other aliasST1C2
humSULTC2
HGNC (Hugo) SULT1C2
LocusID (NCBI) 6819
Atlas_Id 74365
Location 2q12.3  [Link to chromosome band 2q12]
Location_base_pair Starts at 108288639 and ends at 108309915 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SULT1C2   11456
Cards
Entrez_Gene (NCBI)SULT1C2  6819  sulfotransferase family 1C member 2
AliasesST1C1; ST1C2; SULT1C1; humSULTC2
GeneCards (Weizmann)SULT1C2
Ensembl hg19 (Hinxton)ENSG00000198203 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198203 [Gene_View]  chr2:108288639-108309915 [Contig_View]  SULT1C2 [Vega]
ICGC DataPortalENSG00000198203
TCGA cBioPortalSULT1C2
AceView (NCBI)SULT1C2
Genatlas (Paris)SULT1C2
WikiGenes6819
SOURCE (Princeton)SULT1C2
Genetics Home Reference (NIH)SULT1C2
Genomic and cartography
GoldenPath hg38 (UCSC)SULT1C2  -     chr2:108288639-108309915 +  2q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SULT1C2  -     2q12.3   [Description]    (hg19-Feb_2009)
EnsemblSULT1C2 - 2q12.3 [CytoView hg19]  SULT1C2 - 2q12.3 [CytoView hg38]
Mapping of homologs : NCBISULT1C2 [Mapview hg19]  SULT1C2 [Mapview hg38]
OMIM602385   
Gene and transcription
Genbank (Entrez)AA856596 AB008164 AF026303 AF186251 AF186252
RefSeq transcript (Entrez)NM_001056 NM_176825
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SULT1C2
Cluster EST : UnigeneHs.436123 [ NCBI ]
CGAP (NCI)Hs.436123
Alternative Splicing GalleryENSG00000198203
Gene ExpressionSULT1C2 [ NCBI-GEO ]   SULT1C2 [ EBI - ARRAY_EXPRESS ]   SULT1C2 [ SEEK ]   SULT1C2 [ MEM ]
Gene Expression Viewer (FireBrowse)SULT1C2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6819
GTEX Portal (Tissue expression)SULT1C2
Human Protein AtlasENSG00000198203-SULT1C2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00338   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00338  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00338
Splice isoforms : SwissVarO00338
Catalytic activity : Enzyme2.8.2.- [ Enzyme-Expasy ]   2.8.2.-2.8.2.- [ IntEnz-EBI ]   2.8.2.- [ BRENDA ]   2.8.2.- [ KEGG ]   
PhosPhoSitePlusO00338
Domains : Interpro (EBI)P-loop_NTPase    Sulfotransferase_dom   
Domain families : Pfam (Sanger)Sulfotransfer_1 (PF00685)   
Domain families : Pfam (NCBI)pfam00685   
Conserved Domain (NCBI)SULT1C2
DMDM Disease mutations6819
Blocks (Seattle)SULT1C2
PDB (SRS)3BFX   
PDB (PDBSum)3BFX   
PDB (IMB)3BFX   
PDB (RSDB)3BFX   
Structural Biology KnowledgeBase3BFX   
SCOP (Structural Classification of Proteins)3BFX   
CATH (Classification of proteins structures)3BFX   
SuperfamilyO00338
Human Protein Atlas [tissue]ENSG00000198203-SULT1C2 [tissue]
Peptide AtlasO00338
HPRD03858
IPIIPI00011290   IPI00220643   IPI00916602   IPI00916392   IPI00917165   IPI00917861   IPI00917404   
Protein Interaction databases
DIP (DOE-UCLA)O00338
IntAct (EBI)O00338
FunCoupENSG00000198203
BioGRIDSULT1C2
STRING (EMBL)SULT1C2
ZODIACSULT1C2
Ontologies - Pathways
QuickGOO00338
Ontology : AmiGOaryl sulfotransferase activity  protein binding  cytoplasm  cytosol  sulfotransferase activity  sulfotransferase activity  amine metabolic process  3'-phosphoadenosine 5'-phosphosulfate metabolic process  sulfation  extracellular exosome  
Ontology : EGO-EBIaryl sulfotransferase activity  protein binding  cytoplasm  cytosol  sulfotransferase activity  sulfotransferase activity  amine metabolic process  3'-phosphoadenosine 5'-phosphosulfate metabolic process  sulfation  extracellular exosome  
NDEx NetworkSULT1C2
Atlas of Cancer Signalling NetworkSULT1C2
Wikipedia pathwaysSULT1C2
Orthology - Evolution
OrthoDB6819
GeneTree (enSembl)ENSG00000198203
Phylogenetic Trees/Animal Genes : TreeFamSULT1C2
HOVERGENO00338
HOGENOMO00338
Homologs : HomoloGeneSULT1C2
Homology/Alignments : Family Browser (UCSC)SULT1C2
Gene fusions - Rearrangements
Tumor Fusion PortalSULT1C2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSULT1C2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SULT1C2
dbVarSULT1C2
ClinVarSULT1C2
1000_GenomesSULT1C2 
Exome Variant ServerSULT1C2
ExAC (Exome Aggregation Consortium)ENSG00000198203
GNOMAD BrowserENSG00000198203
Genetic variants : HAPMAP6819
Genomic Variants (DGV)SULT1C2 [DGVbeta]
DECIPHERSULT1C2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSULT1C2 
Mutations
ICGC Data PortalSULT1C2 
TCGA Data PortalSULT1C2 
Broad Tumor PortalSULT1C2
OASIS PortalSULT1C2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSULT1C2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSULT1C2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SULT1C2
DgiDB (Drug Gene Interaction Database)SULT1C2
DoCM (Curated mutations)SULT1C2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SULT1C2 (select a term)
intoGenSULT1C2
Cancer3DSULT1C2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602385   
Orphanet
DisGeNETSULT1C2
MedgenSULT1C2
Genetic Testing Registry SULT1C2
NextProtO00338 [Medical]
TSGene6819
GENETestsSULT1C2
Target ValidationSULT1C2
Huge Navigator SULT1C2 [HugePedia]
snp3D : Map Gene to Disease6819
BioCentury BCIQSULT1C2
ClinGenSULT1C2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6819
Chemical/Pharm GKB GenePA164742557
Clinical trialSULT1C2
Miscellaneous
canSAR (ICR)SULT1C2 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSULT1C2
EVEXSULT1C2
GoPubMedSULT1C2
iHOPSULT1C2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:06:32 CET 2017

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