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SULT1C3 (sulfotransferase family, cytosolic, 1C, member 3)

Identity

Alias_namessulfotransferase family, cytosolic, 1C, member 3
Other aliasST1C3
HGNC (Hugo) SULT1C3
LocusID (NCBI) 442038
Atlas_Id 74367
Location 2q12.3  [Link to chromosome band 2q12]
Location_base_pair Starts at 108863651 and ends at 108881807 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SULT1C3   33543
Cards
Entrez_Gene (NCBI)SULT1C3  442038  sulfotransferase family, cytosolic, 1C, member 3
AliasesST1C3
GeneCards (Weizmann)SULT1C3
Ensembl hg19 (Hinxton)ENSG00000196228 [Gene_View]  chr2:108863651-108881807 [Contig_View]  SULT1C3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196228 [Gene_View]  chr2:108863651-108881807 [Contig_View]  SULT1C3 [Vega]
ICGC DataPortalENSG00000196228
TCGA cBioPortalSULT1C3
AceView (NCBI)SULT1C3
Genatlas (Paris)SULT1C3
WikiGenes442038
SOURCE (Princeton)SULT1C3
Genetics Home Reference (NIH)SULT1C3
Genomic and cartography
GoldenPath hg19 (UCSC)SULT1C3  -     chr2:108863651-108881807 +  2q12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SULT1C3  -     2q12.3   [Description]    (hg38-Dec_2013)
EnsemblSULT1C3 - 2q12.3 [CytoView hg19]  SULT1C3 - 2q12.3 [CytoView hg38]
Mapping of homologs : NCBISULT1C3 [Mapview hg19]  SULT1C3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC146362
RefSeq transcript (Entrez)NM_001008743
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929303
Consensus coding sequences : CCDS (NCBI)SULT1C3
Cluster EST : UnigeneHs.535156 [ NCBI ]
CGAP (NCI)Hs.535156
Alternative Splicing GalleryENSG00000196228
Gene ExpressionSULT1C3 [ NCBI-GEO ]   SULT1C3 [ EBI - ARRAY_EXPRESS ]   SULT1C3 [ SEEK ]   SULT1C3 [ MEM ]
Gene Expression Viewer (FireBrowse)SULT1C3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)442038
GTEX Portal (Tissue expression)SULT1C3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IMI6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IMI6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IMI6
Splice isoforms : SwissVarQ6IMI6
PhosPhoSitePlusQ6IMI6
Domains : Interpro (EBI)P-loop_NTPase    Sulfotransferase_dom   
Domain families : Pfam (Sanger)Sulfotransfer_1 (PF00685)   
Domain families : Pfam (NCBI)pfam00685   
Conserved Domain (NCBI)SULT1C3
DMDM Disease mutations442038
Blocks (Seattle)SULT1C3
PDB (SRS)2H8K    2REO   
PDB (PDBSum)2H8K    2REO   
PDB (IMB)2H8K    2REO   
PDB (RSDB)2H8K    2REO   
Structural Biology KnowledgeBase2H8K    2REO   
SCOP (Structural Classification of Proteins)2H8K    2REO   
CATH (Classification of proteins structures)2H8K    2REO   
SuperfamilyQ6IMI6
Human Protein AtlasENSG00000196228
Peptide AtlasQ6IMI6
HPRD18131
IPIIPI00456697   IPI00419819   
Protein Interaction databases
DIP (DOE-UCLA)Q6IMI6
IntAct (EBI)Q6IMI6
FunCoupENSG00000196228
BioGRIDSULT1C3
STRING (EMBL)SULT1C3
ZODIACSULT1C3
Ontologies - Pathways
QuickGOQ6IMI6
Ontology : AmiGOalcohol sulfotransferase activity  aryl sulfotransferase activity  cytoplasm  sulfur compound metabolic process  
Ontology : EGO-EBIalcohol sulfotransferase activity  aryl sulfotransferase activity  cytoplasm  sulfur compound metabolic process  
NDEx NetworkSULT1C3
Atlas of Cancer Signalling NetworkSULT1C3
Wikipedia pathwaysSULT1C3
Orthology - Evolution
OrthoDB442038
GeneTree (enSembl)ENSG00000196228
Phylogenetic Trees/Animal Genes : TreeFamSULT1C3
HOVERGENQ6IMI6
HOGENOMQ6IMI6
Homologs : HomoloGeneSULT1C3
Homology/Alignments : Family Browser (UCSC)SULT1C3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSULT1C3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SULT1C3
dbVarSULT1C3
ClinVarSULT1C3
1000_GenomesSULT1C3 
Exome Variant ServerSULT1C3
ExAC (Exome Aggregation Consortium)SULT1C3 (select the gene name)
Genetic variants : HAPMAP442038
Genomic Variants (DGV)SULT1C3 [DGVbeta]
DECIPHER (Syndromes)2:108863651-108881807  ENSG00000196228
CONAN: Copy Number AnalysisSULT1C3 
Mutations
ICGC Data PortalSULT1C3 
TCGA Data PortalSULT1C3 
Broad Tumor PortalSULT1C3
OASIS PortalSULT1C3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSULT1C3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSULT1C3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SULT1C3
DgiDB (Drug Gene Interaction Database)SULT1C3
DoCM (Curated mutations)SULT1C3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SULT1C3 (select a term)
intoGenSULT1C3
Cancer3DSULT1C3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSULT1C3
Genetic Testing Registry SULT1C3
NextProtQ6IMI6 [Medical]
TSGene442038
GENETestsSULT1C3
Huge Navigator SULT1C3 [HugePedia]
snp3D : Map Gene to Disease442038
BioCentury BCIQSULT1C3
ClinGenSULT1C3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD442038
Chemical/Pharm GKB GenePA162405069
Clinical trialSULT1C3
Miscellaneous
canSAR (ICR)SULT1C3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSULT1C3
EVEXSULT1C3
GoPubMedSULT1C3
iHOPSULT1C3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:47:05 CET 2017

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