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SULT1C4 (sulfotransferase family 1C member 4)

Identity

Alias_namesSULT1C2
sulfotransferase family, cytosolic, 1C, member 2
sulfotransferase family, cytosolic, 1C, member 4
Alias_symbol (synonym)SULT1C
Other alias
HGNC (Hugo) SULT1C4
LocusID (NCBI) 27233
Atlas_Id 74368
Location 2q12.3  [Link to chromosome band 2q12]
Location_base_pair Starts at 108377911 and ends at 108388970 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SULT1C4   11457
Cards
Entrez_Gene (NCBI)SULT1C4  27233  sulfotransferase family 1C member 4
AliasesSULT1C; SULT1C2
GeneCards (Weizmann)SULT1C4
Ensembl hg19 (Hinxton)ENSG00000198075 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198075 [Gene_View]  chr2:108377911-108388970 [Contig_View]  SULT1C4 [Vega]
ICGC DataPortalENSG00000198075
TCGA cBioPortalSULT1C4
AceView (NCBI)SULT1C4
Genatlas (Paris)SULT1C4
WikiGenes27233
SOURCE (Princeton)SULT1C4
Genetics Home Reference (NIH)SULT1C4
Genomic and cartography
GoldenPath hg38 (UCSC)SULT1C4  -     chr2:108377911-108388970 +  2q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SULT1C4  -     2q12.3   [Description]    (hg19-Feb_2009)
EnsemblSULT1C4 - 2q12.3 [CytoView hg19]  SULT1C4 - 2q12.3 [CytoView hg38]
Mapping of homologs : NCBISULT1C4 [Mapview hg19]  SULT1C4 [Mapview hg38]
OMIM608357   
Gene and transcription
Genbank (Entrez)AK297851 AK298755 BC058861 BC125043 HY118496
RefSeq transcript (Entrez)NM_001321770 NM_006588
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SULT1C4
Cluster EST : UnigeneHs.312644 [ NCBI ]
CGAP (NCI)Hs.312644
Alternative Splicing GalleryENSG00000198075
Gene ExpressionSULT1C4 [ NCBI-GEO ]   SULT1C4 [ EBI - ARRAY_EXPRESS ]   SULT1C4 [ SEEK ]   SULT1C4 [ MEM ]
Gene Expression Viewer (FireBrowse)SULT1C4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27233
GTEX Portal (Tissue expression)SULT1C4
Human Protein AtlasENSG00000198075-SULT1C4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75897   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75897  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75897
Splice isoforms : SwissVarO75897
Catalytic activity : Enzyme2.8.2.- [ Enzyme-Expasy ]   2.8.2.-2.8.2.- [ IntEnz-EBI ]   2.8.2.- [ BRENDA ]   2.8.2.- [ KEGG ]   
PhosPhoSitePlusO75897
Domains : Interpro (EBI)P-loop_NTPase    Sulfotransferase_dom   
Domain families : Pfam (Sanger)Sulfotransfer_1 (PF00685)   
Domain families : Pfam (NCBI)pfam00685   
Conserved Domain (NCBI)SULT1C4
DMDM Disease mutations27233
Blocks (Seattle)SULT1C4
PDB (SRS)2AD1    2GWH   
PDB (PDBSum)2AD1    2GWH   
PDB (IMB)2AD1    2GWH   
PDB (RSDB)2AD1    2GWH   
Structural Biology KnowledgeBase2AD1    2GWH   
SCOP (Structural Classification of Proteins)2AD1    2GWH   
CATH (Classification of proteins structures)2AD1    2GWH   
SuperfamilyO75897
Human Protein Atlas [tissue]ENSG00000198075-SULT1C4 [tissue]
Peptide AtlasO75897
HPRD07461
IPIIPI00290561   IPI00916613   
Protein Interaction databases
DIP (DOE-UCLA)O75897
IntAct (EBI)O75897
FunCoupENSG00000198075
BioGRIDSULT1C4
STRING (EMBL)SULT1C4
ZODIACSULT1C4
Ontologies - Pathways
QuickGOO75897
Ontology : AmiGOaryl sulfotransferase activity  aryl sulfotransferase activity  cellular_component  cytosol  cytosol  ethanol catabolic process  sulfotransferase activity  sulfotransferase activity  sulfotransferase activity  3'-phosphoadenosine 5'-phosphosulfate metabolic process  3'-phosphoadenosine 5'-phosphosulfate metabolic process  sulfation  
Ontology : EGO-EBIaryl sulfotransferase activity  aryl sulfotransferase activity  cellular_component  cytosol  cytosol  ethanol catabolic process  sulfotransferase activity  sulfotransferase activity  sulfotransferase activity  3'-phosphoadenosine 5'-phosphosulfate metabolic process  3'-phosphoadenosine 5'-phosphosulfate metabolic process  sulfation  
NDEx NetworkSULT1C4
Atlas of Cancer Signalling NetworkSULT1C4
Wikipedia pathwaysSULT1C4
Orthology - Evolution
OrthoDB27233
GeneTree (enSembl)ENSG00000198075
Phylogenetic Trees/Animal Genes : TreeFamSULT1C4
HOVERGENO75897
HOGENOMO75897
Homologs : HomoloGeneSULT1C4
Homology/Alignments : Family Browser (UCSC)SULT1C4
Gene fusions - Rearrangements
Tumor Fusion PortalSULT1C4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSULT1C4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SULT1C4
dbVarSULT1C4
ClinVarSULT1C4
1000_GenomesSULT1C4 
Exome Variant ServerSULT1C4
ExAC (Exome Aggregation Consortium)ENSG00000198075
GNOMAD BrowserENSG00000198075
Genetic variants : HAPMAP27233
Genomic Variants (DGV)SULT1C4 [DGVbeta]
DECIPHERSULT1C4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSULT1C4 
Mutations
ICGC Data PortalSULT1C4 
TCGA Data PortalSULT1C4 
Broad Tumor PortalSULT1C4
OASIS PortalSULT1C4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSULT1C4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSULT1C4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SULT1C4
DgiDB (Drug Gene Interaction Database)SULT1C4
DoCM (Curated mutations)SULT1C4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SULT1C4 (select a term)
intoGenSULT1C4
Cancer3DSULT1C4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608357   
Orphanet
DisGeNETSULT1C4
MedgenSULT1C4
Genetic Testing Registry SULT1C4
NextProtO75897 [Medical]
TSGene27233
GENETestsSULT1C4
Target ValidationSULT1C4
Huge Navigator SULT1C4 [HugePedia]
snp3D : Map Gene to Disease27233
BioCentury BCIQSULT1C4
ClinGenSULT1C4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27233
Chemical/Pharm GKB GenePA162405070
Clinical trialSULT1C4
Miscellaneous
canSAR (ICR)SULT1C4 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSULT1C4
EVEXSULT1C4
GoPubMedSULT1C4
iHOPSULT1C4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:06:33 CET 2017

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