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SULT1C4 (sulfotransferase family 1C member 4)

Identity

Alias (NCBI)SULT1C
SULT1C2
HGNC (Hugo) SULT1C4
HGNC Alias symbSULT1C
HGNC Previous nameSULT1C2
HGNC Previous namesulfotransferase family, cytosolic, 1C, member 2
 sulfotransferase family, cytosolic, 1C, member 4
LocusID (NCBI) 27233
Atlas_Id 74368
Location 2q12.3  [Link to chromosome band 2q12]
Location_base_pair Starts at 108377954 and ends at 108388989 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SULT1C4   11457
Cards
Entrez_Gene (NCBI)SULT1C4    sulfotransferase family 1C member 4
AliasesSULT1C; SULT1C2
GeneCards (Weizmann)SULT1C4
Ensembl hg19 (Hinxton)ENSG00000198075 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198075 [Gene_View]  ENSG00000198075 [Sequence]  chr2:108377954-108388989 [Contig_View]  SULT1C4 [Vega]
ICGC DataPortalENSG00000198075
TCGA cBioPortalSULT1C4
AceView (NCBI)SULT1C4
Genatlas (Paris)SULT1C4
SOURCE (Princeton)SULT1C4
Genetics Home Reference (NIH)SULT1C4
Genomic and cartography
GoldenPath hg38 (UCSC)SULT1C4  -     chr2:108377954-108388989 +  2q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SULT1C4  -     2q12.3   [Description]    (hg19-Feb_2009)
GoldenPathSULT1C4 - 2q12.3 [CytoView hg19]  SULT1C4 - 2q12.3 [CytoView hg38]
ImmunoBaseENSG00000198075
Genome Data Viewer NCBISULT1C4 [Mapview hg19]  
OMIM608357   
Gene and transcription
Genbank (Entrez)AK297851 AK298755 BC058861 BC125043 HY118496
RefSeq transcript (Entrez)NM_001321770 NM_006588
Consensus coding sequences : CCDS (NCBI)SULT1C4
Gene ExpressionSULT1C4 [ NCBI-GEO ]   SULT1C4 [ EBI - ARRAY_EXPRESS ]   SULT1C4 [ SEEK ]   SULT1C4 [ MEM ]
Gene Expression Viewer (FireBrowse)SULT1C4 [ Firebrowse - Broad ]
GenevisibleExpression of SULT1C4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27233
GTEX Portal (Tissue expression)SULT1C4
Human Protein AtlasENSG00000198075-SULT1C4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75897   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75897  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75897
Catalytic activity : Enzyme2.8.2.- [ Enzyme-Expasy ]   2.8.2.-2.8.2.- [ IntEnz-EBI ]   2.8.2.- [ BRENDA ]   2.8.2.- [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusO75897
Domains : Interpro (EBI)P-loop_NTPase    Sulfotransferase_dom   
Domain families : Pfam (Sanger)Sulfotransfer_1 (PF00685)   
Domain families : Pfam (NCBI)pfam00685   
Conserved Domain (NCBI)SULT1C4
PDB (RSDB)2AD1    2GWH   
PDB Europe2AD1    2GWH   
PDB (PDBSum)2AD1    2GWH   
PDB (IMB)2AD1    2GWH   
Structural Biology KnowledgeBase2AD1    2GWH   
SCOP (Structural Classification of Proteins)2AD1    2GWH   
CATH (Classification of proteins structures)2AD1    2GWH   
SuperfamilyO75897
AlphaFold pdb e-kbO75897   
Human Protein Atlas [tissue]ENSG00000198075-SULT1C4 [tissue]
HPRD07461
Protein Interaction databases
DIP (DOE-UCLA)O75897
IntAct (EBI)O75897
BioGRIDSULT1C4
STRING (EMBL)SULT1C4
ZODIACSULT1C4
Ontologies - Pathways
QuickGOO75897
Ontology : AmiGOaryl sulfotransferase activity  aryl sulfotransferase activity  cytoplasm  cytosol  cytosol  ethanol catabolic process  sulfotransferase activity  sulfotransferase activity  sulfotransferase activity  3'-phosphoadenosine 5'-phosphosulfate metabolic process  3'-phosphoadenosine 5'-phosphosulfate metabolic process  sulfation  sulfation  
Ontology : EGO-EBIaryl sulfotransferase activity  aryl sulfotransferase activity  cytoplasm  cytosol  cytosol  ethanol catabolic process  sulfotransferase activity  sulfotransferase activity  sulfotransferase activity  3'-phosphoadenosine 5'-phosphosulfate metabolic process  3'-phosphoadenosine 5'-phosphosulfate metabolic process  sulfation  sulfation  
Pathways : KEGGCysteine metabolism   
NDEx NetworkSULT1C4
Atlas of Cancer Signalling NetworkSULT1C4
Wikipedia pathwaysSULT1C4
Orthology - Evolution
OrthoDB27233
GeneTree (enSembl)ENSG00000198075
Phylogenetic Trees/Animal Genes : TreeFamSULT1C4
Homologs : HomoloGeneSULT1C4
Homology/Alignments : Family Browser (UCSC)SULT1C4
Gene fusions - Rearrangements
Fusion : QuiverSULT1C4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSULT1C4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SULT1C4
dbVarSULT1C4
ClinVarSULT1C4
MonarchSULT1C4
1000_GenomesSULT1C4 
Exome Variant ServerSULT1C4
GNOMAD BrowserENSG00000198075
Varsome BrowserSULT1C4
ACMGSULT1C4 variants
VarityO75897
Genomic Variants (DGV)SULT1C4 [DGVbeta]
DECIPHERSULT1C4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSULT1C4 
Mutations
ICGC Data PortalSULT1C4 
TCGA Data PortalSULT1C4 
Broad Tumor PortalSULT1C4
OASIS PortalSULT1C4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSULT1C4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSULT1C4
Mutations and Diseases : HGMDSULT1C4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSULT1C4
DgiDB (Drug Gene Interaction Database)SULT1C4
DoCM (Curated mutations)SULT1C4
CIViC (Clinical Interpretations of Variants in Cancer)SULT1C4
Cancer3DSULT1C4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608357   
Orphanet
DisGeNETSULT1C4
MedgenSULT1C4
Genetic Testing Registry SULT1C4
NextProtO75897 [Medical]
GENETestsSULT1C4
Target ValidationSULT1C4
Huge Navigator SULT1C4 [HugePedia]
ClinGenSULT1C4
Clinical trials, drugs, therapy
MyCancerGenomeSULT1C4
Protein Interactions : CTDSULT1C4
Pharm GKB GenePA162405070
PharosO75897
Clinical trialSULT1C4
Miscellaneous
canSAR (ICR)SULT1C4
HarmonizomeSULT1C4
DataMed IndexSULT1C4
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSULT1C4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:24:33 CEST 2021

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