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SULT4A1 (sulfotransferase family 4A member 1)

Identity

Alias_namessulfotransferase family 4A, member 1
Alias_symbol (synonym)SULTX3
hBR-STL-1
Other aliasBR-STL-1
BRSTL1
DJ388M5.3
NST
HGNC (Hugo) SULT4A1
LocusID (NCBI) 25830
Atlas_Id 74369
Location 22q13.31  [Link to chromosome band 22q13]
Location_base_pair Starts at 43824507 and ends at 43862498 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SULT4A1   14903
Cards
Entrez_Gene (NCBI)SULT4A1  25830  sulfotransferase family 4A member 1
AliasesBR-STL-1; BRSTL1; DJ388M5.3; NST; 
SULTX3; hBR-STL-1
GeneCards (Weizmann)SULT4A1
Ensembl hg19 (Hinxton)ENSG00000130540 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130540 [Gene_View]  chr22:43824507-43862498 [Contig_View]  SULT4A1 [Vega]
ICGC DataPortalENSG00000130540
TCGA cBioPortalSULT4A1
AceView (NCBI)SULT4A1
Genatlas (Paris)SULT4A1
WikiGenes25830
SOURCE (Princeton)SULT4A1
Genetics Home Reference (NIH)SULT4A1
Genomic and cartography
GoldenPath hg38 (UCSC)SULT4A1  -     chr22:43824507-43862498 -  22q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SULT4A1  -     22q13.31   [Description]    (hg19-Feb_2009)
EnsemblSULT4A1 - 22q13.31 [CytoView hg19]  SULT4A1 - 22q13.31 [CytoView hg38]
Mapping of homologs : NCBISULT4A1 [Mapview hg19]  SULT4A1 [Mapview hg38]
OMIM608359   
Gene and transcription
Genbank (Entrez)AF115311 AF176342 AF188698 AF251263 AK091700
RefSeq transcript (Entrez)NM_014351 NM_176874
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SULT4A1
Cluster EST : UnigeneHs.189810 [ NCBI ]
CGAP (NCI)Hs.189810
Alternative Splicing GalleryENSG00000130540
Gene ExpressionSULT4A1 [ NCBI-GEO ]   SULT4A1 [ EBI - ARRAY_EXPRESS ]   SULT4A1 [ SEEK ]   SULT4A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SULT4A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25830
GTEX Portal (Tissue expression)SULT4A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BR01   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BR01  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BR01
Splice isoforms : SwissVarQ9BR01
Catalytic activity : Enzyme2.8.2.- [ Enzyme-Expasy ]   2.8.2.-2.8.2.- [ IntEnz-EBI ]   2.8.2.- [ BRENDA ]   2.8.2.- [ KEGG ]   
PhosPhoSitePlusQ9BR01
Domains : Interpro (EBI)P-loop_NTPase    Sulfotransferase_dom   
Domain families : Pfam (Sanger)Sulfotransfer_1 (PF00685)   
Domain families : Pfam (NCBI)pfam00685   
Conserved Domain (NCBI)SULT4A1
DMDM Disease mutations25830
Blocks (Seattle)SULT4A1
PDB (SRS)1ZD1   
PDB (PDBSum)1ZD1   
PDB (IMB)1ZD1   
PDB (RSDB)1ZD1   
Structural Biology KnowledgeBase1ZD1   
SCOP (Structural Classification of Proteins)1ZD1   
CATH (Classification of proteins structures)1ZD1   
SuperfamilyQ9BR01
Human Protein AtlasENSG00000130540
Peptide AtlasQ9BR01
HPRD07462
IPIIPI00161549   IPI00219423   IPI00922095   IPI00877712   
Protein Interaction databases
DIP (DOE-UCLA)Q9BR01
IntAct (EBI)Q9BR01
FunCoupENSG00000130540
BioGRIDSULT4A1
STRING (EMBL)SULT4A1
ZODIACSULT4A1
Ontologies - Pathways
QuickGOQ9BR01
Ontology : AmiGOaryl sulfotransferase activity  protein binding  cytosol  sulfotransferase activity  biological_process  steroid metabolic process  identical protein binding  3'-phosphoadenosine 5'-phosphosulfate metabolic process  
Ontology : EGO-EBIaryl sulfotransferase activity  protein binding  cytosol  sulfotransferase activity  biological_process  steroid metabolic process  identical protein binding  3'-phosphoadenosine 5'-phosphosulfate metabolic process  
NDEx NetworkSULT4A1
Atlas of Cancer Signalling NetworkSULT4A1
Wikipedia pathwaysSULT4A1
Orthology - Evolution
OrthoDB25830
GeneTree (enSembl)ENSG00000130540
Phylogenetic Trees/Animal Genes : TreeFamSULT4A1
HOVERGENQ9BR01
HOGENOMQ9BR01
Homologs : HomoloGeneSULT4A1
Homology/Alignments : Family Browser (UCSC)SULT4A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSULT4A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SULT4A1
dbVarSULT4A1
ClinVarSULT4A1
1000_GenomesSULT4A1 
Exome Variant ServerSULT4A1
ExAC (Exome Aggregation Consortium)SULT4A1 (select the gene name)
Genetic variants : HAPMAP25830
Genomic Variants (DGV)SULT4A1 [DGVbeta]
DECIPHERSULT4A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSULT4A1 
Mutations
ICGC Data PortalSULT4A1 
TCGA Data PortalSULT4A1 
Broad Tumor PortalSULT4A1
OASIS PortalSULT4A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSULT4A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSULT4A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SULT4A1
DgiDB (Drug Gene Interaction Database)SULT4A1
DoCM (Curated mutations)SULT4A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SULT4A1 (select a term)
intoGenSULT4A1
Cancer3DSULT4A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608359   
Orphanet
MedgenSULT4A1
Genetic Testing Registry SULT4A1
NextProtQ9BR01 [Medical]
TSGene25830
GENETestsSULT4A1
Target ValidationSULT4A1
Huge Navigator SULT4A1 [HugePedia]
snp3D : Map Gene to Disease25830
BioCentury BCIQSULT4A1
ClinGenSULT4A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25830
Chemical/Pharm GKB GenePA412
Clinical trialSULT4A1
Miscellaneous
canSAR (ICR)SULT4A1 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSULT4A1
EVEXSULT4A1
GoPubMedSULT4A1
iHOPSULT4A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:45 CEST 2017

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