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SULT6B1 (sulfotransferase family 6B member 1)

Identity

Alias_namessulfotransferase family, cytosolic, 6B, member 1
Other alias-
HGNC (Hugo) SULT6B1
LocusID (NCBI) 391365
Atlas_Id 74370
Location 2p22.2  [Link to chromosome band 2p22]
Location_base_pair Starts at 37167820 and ends at 37188547 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EIF2AK2 (2p22.2) / SULT6B1 (2p22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SULT6B1   33433
Cards
Entrez_Gene (NCBI)SULT6B1  391365  sulfotransferase family 6B member 1
Aliases
GeneCards (Weizmann)SULT6B1
Ensembl hg19 (Hinxton)ENSG00000138068 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138068 [Gene_View]  chr2:37167820-37188547 [Contig_View]  SULT6B1 [Vega]
ICGC DataPortalENSG00000138068
TCGA cBioPortalSULT6B1
AceView (NCBI)SULT6B1
Genatlas (Paris)SULT6B1
WikiGenes391365
SOURCE (Princeton)SULT6B1
Genetics Home Reference (NIH)SULT6B1
Genomic and cartography
GoldenPath hg38 (UCSC)SULT6B1  -     chr2:37167820-37188547 -  2p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SULT6B1  -     2p22.2   [Description]    (hg19-Feb_2009)
EnsemblSULT6B1 - 2p22.2 [CytoView hg19]  SULT6B1 - 2p22.2 [CytoView hg38]
Mapping of homologs : NCBISULT6B1 [Mapview hg19]  SULT6B1 [Mapview hg38]
OMIM617152   
Gene and transcription
Genbank (Entrez)AY289770 AY289771 AY289772 AY289773 AY289774
RefSeq transcript (Entrez)NM_001032377
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SULT6B1
Cluster EST : UnigeneHs.631892 [ NCBI ]
CGAP (NCI)Hs.631892
Alternative Splicing GalleryENSG00000138068
Gene ExpressionSULT6B1 [ NCBI-GEO ]   SULT6B1 [ EBI - ARRAY_EXPRESS ]   SULT6B1 [ SEEK ]   SULT6B1 [ MEM ]
Gene Expression Viewer (FireBrowse)SULT6B1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)391365
GTEX Portal (Tissue expression)SULT6B1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IMI4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IMI4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IMI4
Splice isoforms : SwissVarQ6IMI4
PhosPhoSitePlusQ6IMI4
Domains : Interpro (EBI)P-loop_NTPase    Sulfotransferase_dom   
Domain families : Pfam (Sanger)Sulfotransfer_1 (PF00685)   
Domain families : Pfam (NCBI)pfam00685   
Conserved Domain (NCBI)SULT6B1
DMDM Disease mutations391365
Blocks (Seattle)SULT6B1
SuperfamilyQ6IMI4
Human Protein AtlasENSG00000138068
Peptide AtlasQ6IMI4
IPIIPI00454714   IPI00554712   IPI01014641   IPI00892581   
Protein Interaction databases
DIP (DOE-UCLA)Q6IMI4
IntAct (EBI)Q6IMI4
FunCoupENSG00000138068
BioGRIDSULT6B1
STRING (EMBL)SULT6B1
ZODIACSULT6B1
Ontologies - Pathways
QuickGOQ6IMI4
Ontology : AmiGOcytoplasm  sulfotransferase activity  
Ontology : EGO-EBIcytoplasm  sulfotransferase activity  
NDEx NetworkSULT6B1
Atlas of Cancer Signalling NetworkSULT6B1
Wikipedia pathwaysSULT6B1
Orthology - Evolution
OrthoDB391365
GeneTree (enSembl)ENSG00000138068
Phylogenetic Trees/Animal Genes : TreeFamSULT6B1
HOVERGENQ6IMI4
HOGENOMQ6IMI4
Homologs : HomoloGeneSULT6B1
Homology/Alignments : Family Browser (UCSC)SULT6B1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSULT6B1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SULT6B1
dbVarSULT6B1
ClinVarSULT6B1
1000_GenomesSULT6B1 
Exome Variant ServerSULT6B1
ExAC (Exome Aggregation Consortium)SULT6B1 (select the gene name)
Genetic variants : HAPMAP391365
Genomic Variants (DGV)SULT6B1 [DGVbeta]
DECIPHERSULT6B1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSULT6B1 
Mutations
ICGC Data PortalSULT6B1 
TCGA Data PortalSULT6B1 
Broad Tumor PortalSULT6B1
OASIS PortalSULT6B1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSULT6B1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSULT6B1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SULT6B1
DgiDB (Drug Gene Interaction Database)SULT6B1
DoCM (Curated mutations)SULT6B1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SULT6B1 (select a term)
intoGenSULT6B1
Cancer3DSULT6B1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617152   
Orphanet
MedgenSULT6B1
Genetic Testing Registry SULT6B1
NextProtQ6IMI4 [Medical]
TSGene391365
GENETestsSULT6B1
Target ValidationSULT6B1
Huge Navigator SULT6B1 [HugePedia]
snp3D : Map Gene to Disease391365
BioCentury BCIQSULT6B1
ClinGenSULT6B1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD391365
Chemical/Pharm GKB GenePA128505849
Clinical trialSULT6B1
Miscellaneous
canSAR (ICR)SULT6B1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSULT6B1
EVEXSULT6B1
GoPubMedSULT6B1
iHOPSULT6B1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:45 CEST 2017

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