Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SUMF1 (sulfatase modifying factor 1)

Identity

Alias_symbol (synonym)FGE
UNQ3037
Other aliasAAPA3037
HGNC (Hugo) SUMF1
LocusID (NCBI) 285362
Atlas_Id 74371
Location 3p26.1  [Link to chromosome band 3p26]
Location_base_pair Starts at 4402829 and ends at 4508966 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ITPR1 (3p26.1) / SUMF1 (3p26.1)SERPINA1 (14q32.13) / SUMF1 (3p26.1)SMAD7 (18q21.1) / SUMF1 (3p26.1)
SUMF1 (3p26.1) / LRRFIP2 (3p22.2)SUMF1 (3p26.1) / PRPF38B (1p13.3)SUMF1 (3p26.1) / SUMF1 (3p26.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SUMF1   20376
Cards
Entrez_Gene (NCBI)SUMF1  285362  sulfatase modifying factor 1
AliasesAAPA3037; FGE; UNQ3037
GeneCards (Weizmann)SUMF1
Ensembl hg19 (Hinxton)ENSG00000144455 [Gene_View]  chr3:4402829-4508966 [Contig_View]  SUMF1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000144455 [Gene_View]  chr3:4402829-4508966 [Contig_View]  SUMF1 [Vega]
ICGC DataPortalENSG00000144455
TCGA cBioPortalSUMF1
AceView (NCBI)SUMF1
Genatlas (Paris)SUMF1
WikiGenes285362
SOURCE (Princeton)SUMF1
Genetics Home Reference (NIH)SUMF1
Genomic and cartography
GoldenPath hg19 (UCSC)SUMF1  -     chr3:4402829-4508966 -  3p26.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SUMF1  -     3p26.1   [Description]    (hg38-Dec_2013)
EnsemblSUMF1 - 3p26.1 [CytoView hg19]  SUMF1 - 3p26.1 [CytoView hg38]
Mapping of homologs : NCBISUMF1 [Mapview hg19]  SUMF1 [Mapview hg38]
OMIM272200   607939   
Gene and transcription
Genbank (Entrez)AB448737 AK057983 AK075459 AK094111 AK295240
RefSeq transcript (Entrez)NM_001164674 NM_001164675 NM_182760
RefSeq genomic (Entrez)NC_000003 NC_018914 NG_016225 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)SUMF1
Cluster EST : UnigeneHs.350475 [ NCBI ]
CGAP (NCI)Hs.350475
Alternative Splicing GalleryENSG00000144455
Gene ExpressionSUMF1 [ NCBI-GEO ]   SUMF1 [ EBI - ARRAY_EXPRESS ]   SUMF1 [ SEEK ]   SUMF1 [ MEM ]
Gene Expression Viewer (FireBrowse)SUMF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285362
GTEX Portal (Tissue expression)SUMF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBK3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBK3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBK3
Splice isoforms : SwissVarQ8NBK3
Catalytic activity : Enzyme1.8.99.- [ Enzyme-Expasy ]   1.8.99.-1.8.99.- [ IntEnz-EBI ]   1.8.99.- [ BRENDA ]   1.8.99.- [ KEGG ]   
PhosPhoSitePlusQ8NBK3
Domains : Interpro (EBI)C-type_lectin_fold    SUMF_dom   
Domain families : Pfam (Sanger)FGE-sulfatase (PF03781)   
Domain families : Pfam (NCBI)pfam03781   
Conserved Domain (NCBI)SUMF1
DMDM Disease mutations285362
Blocks (Seattle)SUMF1
PDB (SRS)1Y1E    1Y1F    1Y1G    1Y1H    1Y1I    1Y1J    1Z70    2AFT    2AFY    2AII    2AIJ    2AIK    2HI8    2HIB   
PDB (PDBSum)1Y1E    1Y1F    1Y1G    1Y1H    1Y1I    1Y1J    1Z70    2AFT    2AFY    2AII    2AIJ    2AIK    2HI8    2HIB   
PDB (IMB)1Y1E    1Y1F    1Y1G    1Y1H    1Y1I    1Y1J    1Z70    2AFT    2AFY    2AII    2AIJ    2AIK    2HI8    2HIB   
PDB (RSDB)1Y1E    1Y1F    1Y1G    1Y1H    1Y1I    1Y1J    1Z70    2AFT    2AFY    2AII    2AIJ    2AIK    2HI8    2HIB   
Structural Biology KnowledgeBase1Y1E    1Y1F    1Y1G    1Y1H    1Y1I    1Y1J    1Z70    2AFT    2AFY    2AII    2AIJ    2AIK    2HI8    2HIB   
SCOP (Structural Classification of Proteins)1Y1E    1Y1F    1Y1G    1Y1H    1Y1I    1Y1J    1Z70    2AFT    2AFY    2AII    2AIJ    2AIK    2HI8    2HIB   
CATH (Classification of proteins structures)1Y1E    1Y1F    1Y1G    1Y1H    1Y1I    1Y1J    1Z70    2AFT    2AFY    2AII    2AIJ    2AIK    2HI8    2HIB   
SuperfamilyQ8NBK3
Human Protein AtlasENSG00000144455
Peptide AtlasQ8NBK3
HPRD06399
IPIIPI00301144   IPI00332413   IPI01009479   IPI00884299   IPI00785161   IPI00909551   IPI00432718   IPI00909612   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBK3
IntAct (EBI)Q8NBK3
FunCoupENSG00000144455
BioGRIDSUMF1
STRING (EMBL)SUMF1
ZODIACSUMF1
Ontologies - Pathways
QuickGOQ8NBK3
Ontology : AmiGOendoplasmic reticulum lumen  sphingolipid metabolic process  glycosphingolipid metabolic process  oxidoreductase activity  protein homodimerization activity  post-translational protein modification  cellular protein metabolic process  small molecule metabolic process  metal ion binding  oxidation-reduction process  
Ontology : EGO-EBIendoplasmic reticulum lumen  sphingolipid metabolic process  glycosphingolipid metabolic process  oxidoreductase activity  protein homodimerization activity  post-translational protein modification  cellular protein metabolic process  small molecule metabolic process  metal ion binding  oxidation-reduction process  
Pathways : KEGGLysosome   
NDEx NetworkSUMF1
Atlas of Cancer Signalling NetworkSUMF1
Wikipedia pathwaysSUMF1
Orthology - Evolution
OrthoDB285362
GeneTree (enSembl)ENSG00000144455
Phylogenetic Trees/Animal Genes : TreeFamSUMF1
HOVERGENQ8NBK3
HOGENOMQ8NBK3
Homologs : HomoloGeneSUMF1
Homology/Alignments : Family Browser (UCSC)SUMF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSUMF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SUMF1
dbVarSUMF1
ClinVarSUMF1
1000_GenomesSUMF1 
Exome Variant ServerSUMF1
ExAC (Exome Aggregation Consortium)SUMF1 (select the gene name)
Genetic variants : HAPMAP285362
Genomic Variants (DGV)SUMF1 [DGVbeta]
DECIPHER (Syndromes)3:4402829-4508966  ENSG00000144455
CONAN: Copy Number AnalysisSUMF1 
Mutations
ICGC Data PortalSUMF1 
TCGA Data PortalSUMF1 
Broad Tumor PortalSUMF1
OASIS PortalSUMF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSUMF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSUMF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SUMF1
DgiDB (Drug Gene Interaction Database)SUMF1
DoCM (Curated mutations)SUMF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SUMF1 (select a term)
intoGenSUMF1
Cancer3DSUMF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM272200    607939   
Orphanet6   
MedgenSUMF1
Genetic Testing Registry SUMF1
NextProtQ8NBK3 [Medical]
TSGene285362
GENETestsSUMF1
Huge Navigator SUMF1 [HugePedia]
snp3D : Map Gene to Disease285362
BioCentury BCIQSUMF1
ClinGenSUMF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285362
Chemical/Pharm GKB GenePA134977552
Clinical trialSUMF1
Miscellaneous
canSAR (ICR)SUMF1 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSUMF1
EVEXSUMF1
GoPubMedSUMF1
iHOPSUMF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:47:06 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.